View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9744_high_3 (Length: 625)

Name: NF9744_high_3
Description: NF9744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9744_high_3
NF9744_high_3
[»] scaffold0272 (1 HSPs)
scaffold0272 (12-606)||(2316-2910)
[»] chr4 (4 HSPs)
chr4 (60-453)||(5037956-5038356)
chr4 (263-411)||(1611575-1611722)
chr4 (382-452)||(13725842-13725912)
chr4 (348-431)||(26728809-26728892)
[»] chr3 (2 HSPs)
chr3 (34-318)||(47644394-47644688)
chr3 (384-433)||(48721701-48721750)
[»] chr7 (4 HSPs)
chr7 (34-173)||(34514821-34514961)
chr7 (301-490)||(34800098-34800287)
chr7 (188-433)||(11888908-11889144)
chr7 (472-505)||(26156703-26156736)
[»] chr8 (1 HSPs)
chr8 (382-452)||(10909517-10909587)
[»] chr6 (2 HSPs)
chr6 (313-490)||(15858393-15858570)
chr6 (471-507)||(17103164-17103200)
[»] chr2 (2 HSPs)
chr2 (385-428)||(34326254-34326297)
chr2 (473-506)||(14849237-14849270)
[»] chr5 (1 HSPs)
chr5 (471-503)||(19110114-19110146)


Alignment Details
Target: scaffold0272 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 12 - 606
Target Start/End: Complemental strand, 2910 - 2316
Alignment:
Q  12 agcatagggacaatacaaaatttaccagaaacctcacaaaactacaacaaaaactcccacagcgcatgacatcaagcttgtaggcagaaaaaccagaaaa 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2910 agcacagggacaatacaaaatttaccagaaacctcacaaaactacaacaaaaactcccacagcgcatgacatcaagcttgtaggcagaaaaaccagaaaa 2811  T
Q  112 ctgccactgctaacagaacagcagacctgaggctaacatataccaaactgcagtacaccaaaacgcaaactgcacgcaccgcataccccagcctcaacct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2810 ctgccactgctaacagaacagcagacctgaggctaacatataccaaactgcagtacaccaaaacgcaaactgcacgcaccgcataccccagcctcaacct 2711  T
Q  212 ccgatcttccgaaaccacaccctgaacgaatcagacactccctagggttccaacatcattcgtaatacaaactcgccgacatattcattcgactcaacac 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2710 ccgatcttccgaaaccacaccctgaacgaatcagacactccctagggttccaacatcattcgtaatacaaactcgccgacatattcattcgactcaacac 2611  T
Q  312 tcatctccacgataaaaccttaatcgcctccaccacctccaccaccccacaaattgtatttgtaaagatgcgatcatttctcaccctccaaatactccaa 411  Q
     ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2610 ccatctccacgataaaaccttaatcgcctctaccacctccactaccccacaaattgtatttgtaaagatgcgatcatttctcaccctccaaatactccaa 2511  T
Q  412 accgcggcgtgccaaatcaaccagtaacctttacgaatcttcatctttgattcacccccattccaacactcccaatgaatgaacaaattcggaggtaaca 511  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2510 accgcggcgtgccaaatcaaccagtaacctttacgaatcttcttctttgattcacccccactccaacactcccaatgaatgaacaaattcggaggtaaca 2411  T
Q  512 caaagctgaaatcctgccagccgaacaaaccttgccacacttctgaagcaaaagacaagtgaataaacagatggtttgtcgactcagccctcctc 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2410 caaagctgaaatcctgccagccgaacaaaccttgccacacttctgaagcaaaagacaagtgaataaacagatggtttgtcgactcagccatcctc 2316  T

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Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 60 - 453
Target Start/End: Complemental strand, 5038356 - 5037956
Alignment:
Q  60 aaaaactcccacagcgcatgacatcaagcttgtaggcag-aaaaaccagaaaact------gccactgctaacagaacagcagacctgaggctaacatat 152  Q
    |||| ||||||||||||||||||  |||| |||||| || ||||||||||||||       |||||||||||||||||||||||| ||||||||||||||    
T  5038356 aaaagctcccacagcgcatgacagaaagcctgtaggaagcaaaaaccagaaaacgaaaacagccactgctaacagaacagcagacttgaggctaacatat 5038257  T
Q  153 accaaactgcagtacaccaaaacgcaaactgcacgcaccgcataccccagcctcaacctccgatcttccgaaaccacaccctgaacgaatcagacactcc 252  Q
    || |||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||   | |||| |||||||||||||||||    
T  5038256 acaaaactgcagtacaccaaaccgcacactgcacacaccgcataccccagcctcaacctccgatcttccgaaatggctcccttaacgaatcagacactcc 5038157  T
Q  253 ctagggttccaacatcattcgtaatacaaactcgccgacatattcattcgactcaacactcatctccacgataaaaccttaatcgcctccaccacctcca 352  Q
    |||||| |||| || |||| ||||||||||||||||| || || ||| ||||||||||| |||||||||||||||||||||||||||||||||  ||||     
T  5038156 ctagggctccagcaccatttgtaatacaaactcgccggcacatgcatacgactcaacacccatctccacgataaaaccttaatcgcctccaccgtctccg 5038057  T
Q  353 ccaccccacaaattgtatttgtaaagatgcgatcatttctcaccctccaaatactccaaaccgcggcgtgccaaatcaaccagtaacctttacgaatctt 452  Q
    |||||||||||| ||||||  |||| || |||    |||||| |||||||||| ||||||||  ||| ||||||||||||||||||||||||||||||||    
T  5038056 ccaccccacaaactgtattattaaaaatacgacgggttctcagcctccaaatattccaaaccttggcatgccaaatcaaccagtaacctttacgaatctt 5037957  T
Q  453 c 453  Q
    |    
T  5037956 c 5037956  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 263 - 411
Target Start/End: Complemental strand, 1611722 - 1611575
Alignment:
Q  263 aacatcattcgtaatacaaactcgccgacatattcattcgactcaacactcatctccacgataaaaccttaatcgcctccaccacctccaccaccccaca 362  Q
    |||| ||||||||| |||||||||||| ||  ||||  ||||||||||  || |||||| | |||||||||||||||||||| | |||| || |||||||    
T  1611722 aacaccattcgtaa-acaaactcgccggcacgttcaaacgactcaacatgcacctccacaacaaaaccttaatcgcctccactaactccgccgccccaca 1611624  T
Q  363 aattgtatttgtaaagatgcgatcatttctcaccctccaaatactccaa 411  Q
    ||||  |||  |||| ||||||||||| |||||||||||||||||||||    
T  1611623 aattacattattaaaaatgcgatcattcctcaccctccaaatactccaa 1611575  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 382 - 452
Target Start/End: Complemental strand, 13725912 - 13725842
Alignment:
Q  382 cgatcatttctcaccctccaaatactccaaaccgcggcgtgccaaatcaaccagtaacctttacgaatctt 452  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||||||||   ||||| ||||||||||    
T  13725912 cgatcatttctcgccctccataaactccaaaccgcggcgtgccaaatcaaccgaaaacctctacgaatctt 13725842  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 431
Target Start/End: Complemental strand, 26728892 - 26728809
Alignment:
Q  348 ctccaccaccccacaaattgtatttgtaaagatgcgatcatttctcaccctccaaatactccaaaccgcggcgtgccaaatcaa 431  Q
    |||| ||||||||||| ||| |||  |||| || || ||||||||| ||||||| |||||||| ||| |||| |||||||||||    
T  26728892 ctcctccaccccacaatttgaattgttaaaaattcgctcatttctcgccctccatatactccacaccacggcatgccaaatcaa 26728809  T

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Target: chr3 (Bit Score: 168; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 34 - 318
Target Start/End: Original strand, 47644394 - 47644688
Alignment:
Q  34 taccagaaacctcacaaaactacaacaaaaa--ctcccacagcgcatgacatcaagcttgtaggcag-aaaaaccagaaaa--------ctgccactgct 122  Q
    |||||||||||||||||| |  |||||||||  ||||| |||||||||||| ||||| |||||| || |||||||||||||        |||||||||||    
T  47644394 taccagaaacctcacaaa-cagcaacaaaaaagctccctcagcgcatgacagcaagcgtgtaggaagcaaaaaccagaaaacaaaaaaactgccactgct 47644492  T
Q  123 aacagaacagcagacctgaggctaacatataccaaactgcagtacaccaaaacgcaaactgcacgcaccgcataccccagcctcaacctccgatcttccg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||||    
T  47644493 aacagaacagcagacctgaggctaacatataccaaactgcagtacaccaaatctgaaactgcatgcaccgcataccccagcctcaacctccgatcttccg 47644592  T
Q  223 aaaccacaccctgaacgaatcagacactccctagggttccaacatcattcgtaatacaaactcgccgacatattcattcgactcaacactcatctc 318  Q
    ||||| | |||| ||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||    
T  47644593 aaacctctcccttaacgaatcagacactccctagggctccaacaccattcgtaatacaaacccgccgacacattcattcgactcaacacccatctc 47644688  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 48721750 - 48721701
Alignment:
Q  384 atcatttctcaccctccaaatactccaaaccgcggcgtgccaaatcaacc 433  Q
    |||||||||  |||||||||||||||||||||| || |||||||| ||||    
T  48721750 atcatttcttgccctccaaatactccaaaccgccgcatgccaaattaacc 48721701  T

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Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 34 - 173
Target Start/End: Original strand, 34514821 - 34514961
Alignment:
Q  34 taccagaaacctcacaaaactacaacaaaaa-ctcccacagcgcatgacatcaagcttgtaggcag-aaaaaccagaaaactgccactgctaacagaaca 131  Q
    ||||||||||| |||||| |  ||||||||| |||||||| |||||||||  |||| |||| | || ||||||||||||||    |||||||||||||||    
T  34514821 taccagaaaccccacaaa-cagcaacaaaaagctcccacaacgcatgacagaaagcctgtaagaagcaaaaaccagaaaacaaaaactgctaacagaaca 34514919  T
Q  132 gcagacctgaggctaacatataccaaactgcagtacaccaaa 173  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  34514920 gcagacctgaggctaacatatacaaaactgcagtacaccaaa 34514961  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 301 - 490
Target Start/End: Original strand, 34800098 - 34800287
Alignment:
Q  301 cgactcaacactcatctccacgataaaaccttaatcgcctccaccacctccaccaccccacaaattgtatttgtaaagatgcgatcatttctcaccctcc 400  Q
    ||||||||||  ||||||||| | |||||||||||||||||||| | |||| |  | |||||| |   |||  ||||||| |||||||||| ||||||||    
T  34800098 cgactcaacatccatctccactacaaaaccttaatcgcctccactaactccgcagctccacaagtaacattattaaagatacgatcatttcgcaccctcc 34800197  T
Q  401 aaatactccaaaccgcggcgtgccaaatcaaccagtaacctttacgaatcttcatctttgattcacccccattccaacactcccaatgaa 490  Q
    |||||||||| |||||||| ||||||||||||   || |||||||||| |||| | |||||  |  |||||||||| |||||||| ||||    
T  34800198 aaatactccacaccgcggcatgccaaatcaactgataccctttacgaaccttcttatttgacactgccccattccatcactcccagtgaa 34800287  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 188 - 433
Target Start/End: Complemental strand, 11889144 - 11888908
Alignment:
Q  188 caccgcataccccagcctcaacctccgatcttccgaaaccacaccctgaacgaatcagacactccctagggttccaacatcattcgtaatacaaactcgc 287  Q
    |||||||||||||||||||||||||||   | |||||||  | || | || | || |||||||| ||  ||  ||||||  |||| ||| ||||||||||    
T  11889144 caccgcataccccagcctcaacctccgcgataccgaaacagccccattaaagcatgagacactctcttaggcaccaacactattcataaaacaaactcgc 11889045  T
Q  288 cgacatattcattcgactcaacactcatctccacgataaaaccttaatcgcctccaccacctccaccaccccacaaattgtatttgtaaagatgcgatca 387  Q
     |  |  ||||  ||||||||||  || |||||||| |||||||||||||||||||| | |        ||||||||||  |||  |||| |||| ||||    
T  11889044 tggtaccttcaaacgactcaacatccacctccacgacaaaaccttaatcgcctccactatc--------cccacaaattaaattgttaaaaatgc-atca 11888954  T
Q  388 tttctcaccctccaaatactccaaaccgcggcgtgccaaatcaacc 433  Q
    |||||| ||||||||||||||||||||||||  |||||||||||||    
T  11888953 tttctcgccctccaaatactccaaaccgcgggatgccaaatcaacc 11888908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 26156736 - 26156703
Alignment:
Q  472 ttccaacactcccaatgaatgaacaaattcggag 505  Q
    |||||||||||||||||||| |||||||||||||    
T  26156736 ttccaacactcccaatgaataaacaaattcggag 26156703  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 382 - 452
Target Start/End: Original strand, 10909517 - 10909587
Alignment:
Q  382 cgatcatttctcaccctccaaatactccaaaccgcggcgtgccaaatcaaccagtaacctttacgaatctt 452  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||   ||||| ||||||||||    
T  10909517 cgatcatttctcaccctccataaactccaaaccgcggcgtgccaaatcaaccgaaaacctctacgaatctt 10909587  T

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Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 313 - 490
Target Start/End: Complemental strand, 15858570 - 15858393
Alignment:
Q  313 catctccacgataaaaccttaatcgcctccaccacctccaccaccccacaaattgtatttgtaaagatgcgatcatttctcaccctccaaatactccaaa 412  Q
    ||||||||||| | |||||| ||||||||||| | |||||||||  ||||| ||  |    |||| || || || |||||||||||||||||||||||||    
T  15858570 catctccacgacagaaccttgatcgcctccactaactccaccacttcacaatttacaccgttaaaaatacggtcgtttctcaccctccaaatactccaaa 15858471  T
Q  413 ccgcggcgtgccaaatcaaccagtaacctttacgaatcttcatctttgattcacccccattccaacactcccaatgaa 490  Q
    |||| || ||||||||||||| | | || || || | |||| | ||||| ||  ||||| ||||||||||||||||||    
T  15858470 ccgcagcatgccaaatcaacctgaacccgtttcggaccttcttatttgactccgccccactccaacactcccaatgaa 15858393  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 471 - 507
Target Start/End: Complemental strand, 17103200 - 17103164
Alignment:
Q  471 attccaacactcccaatgaatgaacaaattcggaggt 507  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  17103200 attccaacactcccaatgaatggacaaattaggaggt 17103164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Complemental strand, 34326297 - 34326254
Alignment:
Q  385 tcatttctcaccctccaaatactccaaaccgcggcgtgccaaat 428  Q
    |||||||| || ||||||||| ||||||||||||||||||||||    
T  34326297 tcatttctaactctccaaatagtccaaaccgcggcgtgccaaat 34326254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 506
Target Start/End: Original strand, 14849237 - 14849270
Alignment:
Q  473 tccaacactcccaatgaatgaacaaattcggagg 506  Q
    ||||||||||||||||||| ||||||||||||||    
T  14849237 tccaacactcccaatgaataaacaaattcggagg 14849270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 471 - 503
Target Start/End: Original strand, 19110114 - 19110146
Alignment:
Q  471 attccaacactcccaatgaatgaacaaattcgg 503  Q
    ||||||||||| |||||||||||||||||||||    
T  19110114 attccaacacttccaatgaatgaacaaattcgg 19110146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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