View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9744_high_4 (Length: 394)
Name: NF9744_high_4
Description: NF9744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9744_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 383
Target Start/End: Original strand, 9216642 - 9217020
Alignment:
| Q |
7 |
gaaccgttgtgtgaacgacaatgaagtatttcagaccacctaacagcttgagcagactctgcagtaactc--gagtttgctgaatcaaggtgggatttga |
104 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
9216642 |
gaaccgttgcatgaacgacaatgaagtatttcagaccacctaacagcttgagcagactctgcagtaactcttgagtttgctgaatccaggtgggatttga |
9216741 |
T |
|
| Q |
105 |
acctgcttgcactatgtcatccacatagactaaccgggcaacaaaacaaaggtcaatacctttggtgaacaaggagtgatcaattgatgatttatggaag |
204 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9216742 |
acctgcttgcactatgtcatctacatagactaaccgggcaacaaaacaagggtcaatacctttggtgaacaaggagtgatcaattgatgatttatggaag |
9216841 |
T |
|
| Q |
205 |
ccatgttgaataatggtggtggaaaatgtatgatatcattgtcttgatgcttgccataaaccatacaagaacttgttaagtttacataccatattctccc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9216842 |
ccatgttgaataatggtggtggaaaatgtatgatatcattgtcttaatgcttgccataaaccatacaagaacttgttaagtttacataccatattctccc |
9216941 |
T |
|
| Q |
305 |
cctcactttgatatcgaagttacggatccaagtatatttcttcaaataggtctccattcaaaaacgcgttgttgatgtc |
383 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9216942 |
cctcactttgatatcgaagcgacaaatccaagtatatttcttcaaataggtctccattcaaaaacgcgttcttgatgtc |
9217020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University