View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9744_low_1 (Length: 1018)
Name: NF9744_low_1
Description: NF9744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9744_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 916; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 916; E-Value: 0
Query Start/End: Original strand, 19 - 1000
Target Start/End: Original strand, 33718263 - 33719250
Alignment:
| Q |
19 |
catcaggtagtggaaaaacaacattattaacagcattaggaggaagacttggtggaaaactttatggatccataacatacaatgaaaaacctttttcaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33718263 |
catcaggtagtggaaaaacaacattattaacagcattaggaggaagacttggtggaaaactttatggatccataacatacaatgaaaaacctttttcaaa |
33718362 |
T |
|
| Q |
119 |
tgttataaaaagaaacacaggttttgtcacacaagatgatgttctttaccctcacttaacggtaaccgaaacgcttgttttcacagcactacttagatta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33718363 |
tgttataaaaagaaacacaggttttgtcacacaagatgatgttctttaccctcacttaacggtaaccgaaacgcttgttttcacagcactacttagatta |
33718462 |
T |
|
| Q |
219 |
ccaaatagtgtcacaaaagaagagaaagttactcatgcaaaaaatgttatagatcaacttggtttaacaaagtgcaaagatagcatagttggaagtgcat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33718463 |
ccaaatagtgtcacaaaagaagagaaagttactcatgcaaaaaatgttatagatcaacttggtttaacaaagtgcaaagatagcatagttggaagtgcat |
33718562 |
T |
|
| Q |
319 |
atctaagaggtgtttctggtggagagaggaaaagggttagtattggacaagaattgcttataaatcctagtttgttgtttcttgatgaaccaacttctgg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33718563 |
atctaagaggtgtttctggtggagagaggaaaagggttagtattggacaagaattgcttataaatcctagtttgttgtttcttgatgaaccaacttctgg |
33718662 |
T |
|
| Q |
419 |
tttggattctactacagcacaaagaattgtgtcaactttgtgggatttggcaagaggtggaaggactattgtgatgacaatacatcaaccttctagtaga |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33718663 |
tttggattctactacagcacaaagaattgtgtcaactttgtgggatttggcaagaggtggaaggactattgtgatgacaatacatcaaccttctagtaga |
33718762 |
T |
|
| Q |
519 |
ttatattatatgtttcataaagttttgttgcttgcagaagggaatgttttgtattttggaaaagggtctgaagctattcaacatttttctaatattggtt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
33718763 |
ttatattatatgtttcataaagttttgttgcttgcagaagggaatgttttgtattttggaaaagggtctgaagctattgaacattttactaatattggtt |
33718862 |
T |
|
| Q |
619 |
atgctcctgctatggctatgaatccttcagatttccttttggatcttgcaaatggtatgttttttattttctatgcattttaccaaatatagcatgagta |
718 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33718863 |
atgctcctgctatggctatgaatccttcagatttccttttggatcttgcaaatggtatgttttttattttctatgcattttaccaaatatagcatgagta |
33718962 |
T |
|
| Q |
719 |
ttgatttaagggactaaatatagcatgagatattaattatggtggagaaactaaattgattgacattttttaatttatttaagcgactagtttgctattt |
818 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33718963 |
ttgatttaagggactaaatatagcatgagatattaattatgatggagagactaaattgattgacattttttaatttatttaagcgactagtttgctattt |
33719062 |
T |
|
| Q |
819 |
cgtatatttgagtgactaaattgatcgacccttacgattttgagaatgaaatgctcatttactcaattttagatggaaaa-cctt-----atatctagtg |
912 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||| |||||| ||| |
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|
| T |
33719063 |
cgtatatttgagtgactaaattgctcgacccttacaattttgagaacgaaatgctcatttactcaattttagatggaaaaaccttgtaatatatctcgtg |
33719162 |
T |
|
| Q |
913 |
ttaacgtttatttaaaaggaaacatttgagattttgtatcatacatataccttgttgctttgctaagtgagaaaatttgcaggtatct |
1000 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
33719163 |
ttaatgtttatttaaaaggaaacatttgagattttgtatcgtacatatacctcgttgctttgctaagtgagaaaatttgcaggtatct |
33719250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 275 - 679
Target Start/End: Original strand, 20687921 - 20688325
Alignment:
| Q |
275 |
acttggtttaacaaagtgcaaagatagcatagttggaagtgcatatctaagaggtgtttctggtggagagaggaaaagggttagtattggacaagaattg |
374 |
Q |
| |
|
||||||||||||||| || ||||||||||| |||||| || | ||||| |||||||| || || || |||||||| || || |||||||| || |
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|
| T |
20687921 |
acttggtttaacaaaatgtaaagatagcatcattggaaaaccaatgttgagaggggtttctggaggggaaagaaaaagggtaagcataggacaagagatg |
20688020 |
T |
|
| Q |
375 |
cttataaatcctagtttgttgtttcttgatgaaccaacttctggtttggattctactacagcacaaagaattgtgtcaactttgtgggatttggcaagag |
474 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||| ||||| || || ||||| || || || || | ||| |||| | ||| ||||| | ||||| | |
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|
| T |
20688021 |
cttataaatccaagtttgttgtttttagatgaacctacttcgggattagattcaacaacggcgcagaaaatcgtgttcaatttatgggagcttgcaagcg |
20688120 |
T |
|
| Q |
475 |
gtggaaggactattgtgatgacaatacatcaaccttctagtagattatattatatgtttcataaagttttgttgcttgcagaagggaatgttttgtattt |
574 |
Q |
| |
|
| ||||| || ||||||||||||||||||||||||| ||||| ||||| |||||||||| | |||||| | | ||||||| | |||||||| |
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|
| T |
20688121 |
gaggaagaacatttgtgatgacaatacatcaaccttcaagtaggatatataatatgtttcacactgttttgattttatcagaaggagttcctttgtatta |
20688220 |
T |
|
| Q |
575 |
tggaaaagggtctgaagctattcaacatttttctaatattggttatgctcctgctatggctatgaatccttcagatttccttttggatcttgcaaatggt |
674 |
Q |
| |
|
|||||| || ||||||||||| || |||| ||| |||||| |||| |||| || || |||| || || ||||||||||||||||||||||||||| |
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| T |
20688221 |
tggaaagggttctgaagctatggaatatttctctggtattggatatgaacctgaaattgccatgagcccatctgatttccttttggatcttgcaaatggt |
20688320 |
T |
|
| Q |
675 |
atgtt |
679 |
Q |
| |
|
||||| |
|
|
| T |
20688321 |
atgtt |
20688325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 10337850 - 10337935
Alignment:
| Q |
123 |
ataaaaagaaacacaggttttgtcacacaagatgatgttctttaccctcacttaacggtaaccgaaacgcttgttttcacagcact |
208 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||||||||||||||||||||||||| || |||||||| || || ||||| ||||| |
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|
| T |
10337850 |
ataaaaagaagaacaggttttgtagctcaagatgatgttctttaccctcacttaaccgttaccgaaacactagtgttcactgcact |
10337935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 357 - 430
Target Start/End: Original strand, 10338084 - 10338157
Alignment:
| Q |
357 |
agtattggacaagaattgcttataaatcctagtttgttgtttcttgatgaaccaacttctggtttggattctac |
430 |
Q |
| |
|
||||| ||||||||| ||||||||||||| || | ||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
10338084 |
agtataggacaagaaatgcttataaatccaagccttttgttgcttgatgaacctacttctggtttggattctac |
10338157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 43532797 - 43532755
Alignment:
| Q |
394 |
tgtttcttgatgaaccaacttctggtttggattctactacagc |
436 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
43532797 |
tgtttcttgatgaaccaacatctggtttggattctacaacagc |
43532755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 336 - 436
Target Start/End: Original strand, 42192585 - 42192685
Alignment:
| Q |
336 |
ggtggagagaggaaaagggttagtattggacaagaattgcttataaatcctagtttgttgtttcttgatgaaccaacttctggtttggattctactacag |
435 |
Q |
| |
|
|||||||| || |||||| | |||||||| |||||| || | | || || |||||||||||| | |||||||||||||| ||||||||||| || |||| |
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|
| T |
42192585 |
ggtggagaaagaaaaaggatgagtattgggcaagaaatgttggtgaacccgagtttgttgtttttggatgaaccaacttcaggtttggattcgaccacag |
42192684 |
T |
|
| Q |
436 |
c |
436 |
Q |
| |
|
| |
|
|
| T |
42192685 |
c |
42192685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 394 - 427
Target Start/End: Original strand, 24126679 - 24126712
Alignment:
| Q |
394 |
tgtttcttgatgaaccaacttctggtttggattc |
427 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
24126679 |
tgtttcttgatgaaccaacatctggtttggattc |
24126712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 394 - 427
Target Start/End: Original strand, 24144905 - 24144938
Alignment:
| Q |
394 |
tgtttcttgatgaaccaacttctggtttggattc |
427 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
24144905 |
tgtttcttgatgaaccaacatctggtttggattc |
24144938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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