View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9744_low_11 (Length: 309)

Name: NF9744_low_11
Description: NF9744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9744_low_11
NF9744_low_11
[»] chr7 (3 HSPs)
chr7 (1-309)||(37645322-37645630)
chr7 (5-309)||(19827246-19827560)
chr7 (5-192)||(19824286-19824475)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 37645630 - 37645322
Alignment:
Q  1 agcagcagaaatcttctcttcatctgaaccatcaattgtaatttcataaaccttttcgatctccgctaagctttaatcaaatcaatgagcttaaattcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37645630 agcagcagaaatcttctcttcatctgaaccatcaattgtaatttcataaaccttttcgatctccgctaagctttaatcaaatcaatgagcttaaattcag 37645531  T
Q  101 ttgccttaccttgtaannnnnnnaaaaagagcatctaatatacccagcattcaggagagatagaaaatctttatttgcaagaaagaaagaaaagaaacct 200  Q
    ||||||||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37645530 ttgccttaccttgtaatttttttaaaaaaagcatctaatatacccagcattcaggagagatagaaaatctttatttgcaagaaagaaagaaaagaaacct 37645431  T
Q  201 tccaggttggatagtttctttaaccaatcaccttccccaaatcattctcttctaaaaccattttaagaggcaaggacagggtacagagcataggaatgat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37645430 tccaggttggatagtttctttaaccaatcaccttccccaaatcattctcttctaaaaccattttaagaggcaaggacagggtacagagcatagaaatgat 37645331  T
Q  301 acgagtcat 309  Q
    |||||||||    
T  37645330 acgagtcat 37645322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 5 - 309
Target Start/End: Complemental strand, 19827560 - 19827246
Alignment:
Q  5 gcagaaatcttctcttcatctgaaccatcaattgtaatttcataaaccttttcgatctccgctaagctttaatcaaatcaatgagcttaaattcagttgc 104  Q
    ||||||||||||||||||||||||||||  |||| ||| || || | |||||||||||||||||||||||||   ||||||||| |||||||||||||||    
T  19827560 gcagaaatcttctcttcatctgaaccatatattgcaatctcgtagatcttttcgatctccgctaagctttaaaacaatcaatgatcttaaattcagttgc 19827461  T
Q  105 cttaccttgtaannnnnnnaaaaagagcatctaatatacccagcattcaggagagatagaaaatctttatttgcaagaaagaa--------agaaaagaa 196  Q
    |||| |||||||       |||||||||||||||| |||||||||||||  |||||| ||||||||||||||| |||||||||        |||||||||    
T  19827460 cttatcttgtaaaatttaaaaaaagagcatctaatgtacccagcattcaaaagagatggaaaatctttatttggaagaaagaaagaaagagagaaaagaa 19827361  T
Q  197 accttccaggttggatagtttctttaaccaatcaccttccccaaatcattctcttctaaaacca-ttttaagaggcaag-gacagggtacagagcatagg 294  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||    
T  19827360 accttccaggttggatagtttctttaaccaaccaccttccacaaatcattcccttctaaaaccatttttaagaggcaagtgacagggtatagagcatagg 19827261  T
Q  295 aatgatacgagtcat 309  Q
    |||||||||||||||    
T  19827260 aatgatacgagtcat 19827246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 19824475 - 19824286
Alignment:
Q  5 gcagaaatcttctcttcatctgaaccatcaattgtaatttcataaaccttttcgatctccgctaagctttaatcaaatcaatgagcttaaattcagttgc 104  Q
    ||||||||||||||||||||||||||||  |||| ||| || || | ||||||||||||||| |||||||||   ||||||||| |||||||||| ||||    
T  19824475 gcagaaatcttctcttcatctgaaccatatattgcaatctcgtagatcttttcgatctccgccaagctttaaaacaatcaatgatcttaaattcaattgc 19824376  T
Q  105 cttaccttgt--aannnnnnnaaaaagagcatctaatatacccagcattcaggagagatagaaaatctttatttgcaagaaagaaagaaa 192  Q
    |||| |||||  ||       |||||||||||||||| |||||||||||||  |||||| ||||||||||||||| ||||||||||||||    
T  19824375 cttatcttgtaaaatttaaaaaaaaagagcatctaatgtacccagcattcaaaagagatggaaaatctttatttggaagaaagaaagaaa 19824286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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