View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9744_low_2 (Length: 678)
Name: NF9744_low_2
Description: NF9744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9744_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 608; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 18 - 665
Target Start/End: Original strand, 14247700 - 14248347
Alignment:
| Q |
18 |
aatagcagccttgttcaattgtgagtgtggcgattctatcatcaatgttgtttgtgggaggtatgaacaccttatgggtgagtttacttaccaccttgaa |
117 |
Q |
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| T |
14247700 |
aatagcagccttgttcaattgtgagtgtggcgattctatcatcaatgttgtttgtgggaggtatgaacaccttatgggtgagtttacttaccaccttgaa |
14247799 |
T |
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| Q |
118 |
taggacaattatgatctttccttccttttaaatttgtgaaattgtgtggttcttgttgcaattcgagtcactaatgtcatgtttgtttatgggtgtgata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
14247800 |
taggacaattatgatctttccttccttttaaatttgtgaaactgtgtggttcttgttgcaattcgagtcactaatgtcatttttgtttatgggtttgata |
14247899 |
T |
|
| Q |
218 |
gtaagtcttgtgtctcatgtttgcacaacatgaattttctaaagcaccaaacagtagaagtgtgacaatgtgtactgatattgttatatttttagtgctc |
317 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14247900 |
gtaaatcttgtgtctcatgtttgcacaacatgaattttctaaagcaccaaacagtagtagtgtgacaatgtgtactgatattgttatatttttagtgctc |
14247999 |
T |
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| Q |
318 |
aatgctgagatgagtcttgtggctgggtaggtaggttcacgtcctgtactaagtgttgcaccccatttgttctgataggctccaaaatgacctttccaag |
417 |
Q |
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| T |
14248000 |
aatgctgagatgagtcttgtggctggggaggtaggttcacgtcctgtactaagtgttgcgccccatttgctctgataggctccaaaatgacctttccaag |
14248099 |
T |
|
| Q |
418 |
gtcaacgcccttattgggatggagcaagatgaagtctaagataggaactcaacatgcttagcagtcatgagcaaatggttgagtaactttcaacccttcg |
517 |
Q |
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| T |
14248100 |
gtcaacgcccttattgggatggagcaagatgaagtctaagataggaactcaacatgcttagcagtcatgagcaaatggttgagtaactttcaacccttcg |
14248199 |
T |
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| Q |
518 |
tcccaaattctatgttattaagactactttctaagacgtccaattgtttgaattagctagctaggaaaattttgttcgattgtgacgatgagtgcacaaa |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14248200 |
tcccaaattctatgttattaagactactttctaagacgtccaattgtttgaattagctagctaggaaaattttgttcgatggtgacgatgagtgcacaaa |
14248299 |
T |
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| Q |
618 |
gccaataatattcaattcagtagaatttactcaatgtcttttgttgat |
665 |
Q |
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| T |
14248300 |
gccaagaatattcaattcagtagaatttactcaatgtcttttgttgat |
14248347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 468
Target Start/End: Original strand, 14263349 - 14263398
Alignment:
| Q |
419 |
tcaacgcccttattgggatggagcaagatgaagtctaagataggaactca |
468 |
Q |
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|||||| ||| ||||||||||||||| ||||||||||| |||||||||| |
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| T |
14263349 |
tcaacgacctaattgggatggagcaacatgaagtctaaactaggaactca |
14263398 |
T |
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