View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9744_low_4 (Length: 438)
Name: NF9744_low_4
Description: NF9744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9744_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 11390903 - 11391239
Alignment:
| Q |
18 |
cctttatggaacaatgatttgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgctatggttatgatagaattgtgcaatgaaa |
117 |
Q |
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| T |
11390903 |
cctttatggaacaatgatttgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgctatggttatgatagaattgtgcaatgaaa |
11391002 |
T |
|
| Q |
118 |
tttgtagagatggaaccatgcatgtttttaggaaattttcaagtcgagattattgtgaggttgcatgtgttgctaaaagagaaatctccaaaaaactttt |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11391003 |
tttgtagagatggaacaatgcatgtttttaggaaattttcaagtcgagattattgtgaggttgcatgtgttgctaaaagagaaatctccaaaaaactttt |
11391102 |
T |
|
| Q |
218 |
ttatcatagaatttgtctcaatatgggacaatatttttcttttcagtttattaagaggagcttcaaagccttatattaatgtatacatatgttggatatt |
317 |
Q |
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| T |
11391103 |
ttatcatagaatttgtctcaatatgggacaatatttttcttttcagattattaagaggaacttgaaagccttatattaatgtatacatatgttggatatt |
11391202 |
T |
|
| Q |
318 |
tttcatc----aattaatgtagaaaatttagtaccaa |
350 |
Q |
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| T |
11391203 |
tttcatcaattaattaatgtagaaaatttagtaccaa |
11391239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 11419721 - 11419414
Alignment:
| Q |
18 |
cctttatggaacaatgatttgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgctatggttatgatagaattgtgcaatgaaa |
117 |
Q |
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| T |
11419721 |
cctttatggaacaatgatttgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgctatggttatgatagaattctgcaatgaaa |
11419622 |
T |
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| Q |
118 |
tttgtagagatggaaccatgcatgtttttaggaaattttcaagtcgagattattgtgaggttgcatgtgttgctaaaagagaaatctccaaaaaactttt |
217 |
Q |
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| T |
11419621 |
tttgtagagatggaacaatgcatgtttttaggaaattttcaagtcgagattattgtgaggttgcatgttttgctaaaagagaaatctccaaaaaactttt |
11419522 |
T |
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| Q |
218 |
ttatcatagaatttgtctcaatatgggacaatatttttcttttcagtttattaagaggagcttcaaagccttatattaatgtatacatatgttggatatt |
317 |
Q |
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| T |
11419521 |
ttatcctagaatt------------------tattgttcttttcagtttattaa---gagcttcaaagccttatattaatgtatacatatgttcgatatt |
11419443 |
T |
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| Q |
318 |
tttcatcaattaatgtagaaaatttagta |
346 |
Q |
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| T |
11419442 |
tttcatcaattaatgtagaaaatttagta |
11419414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 19576528 - 19576447
Alignment:
| Q |
346 |
accaaactagtatttttggttaatttaaggatttgtttatttacttcaatatttggcaatttaagatgcttcagtcgcctttg |
428 |
Q |
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| T |
19576528 |
accaaactcgtatttg-ggttaatttaaggatttgtttatttacttcaatatttagcaatttaagatgcttcagttgcctttg |
19576447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 8856143 - 8856061
Alignment:
| Q |
346 |
accaaactagtatttttggttaatttaaggatttgtttatttacttcaatatttggcaatttaagatgcttcagtcgcctttg |
428 |
Q |
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| T |
8856143 |
accaaactagtatttttgattaatttaaggatttgtttatttacttcaatatttggcaatttaagatgcttcagtcgcctttg |
8856061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 23693424 - 23693492
Alignment:
| Q |
93 |
gttatgatagaattgtgcaatgaaatttgtagagatggaaccatgcatgtttttaggaaattttcaagt |
161 |
Q |
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| T |
23693424 |
gttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagt |
23693492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 23711864 - 23711932
Alignment:
| Q |
93 |
gttatgatagaattgtgcaatgaaatttgtagagatggaaccatgcatgtttttaggaaattttcaagt |
161 |
Q |
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| T |
23711864 |
gttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagt |
23711932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 23730320 - 23730388
Alignment:
| Q |
93 |
gttatgatagaattgtgcaatgaaatttgtagagatggaaccatgcatgtttttaggaaattttcaagt |
161 |
Q |
| |
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|||||||| |||| ||||| | |||||||| |||| |||| |||| | ||||||| ||||||||||||| |
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| T |
23730320 |
gttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagt |
23730388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 23748775 - 23748843
Alignment:
| Q |
93 |
gttatgatagaattgtgcaatgaaatttgtagagatggaaccatgcatgtttttaggaaattttcaagt |
161 |
Q |
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| T |
23748775 |
gttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagt |
23748843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 24108802 - 24108734
Alignment:
| Q |
93 |
gttatgatagaattgtgcaatgaaatttgtagagatggaaccatgcatgtttttaggaaattttcaagt |
161 |
Q |
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| T |
24108802 |
gttatgatggattcgtgcattcaaatttgtagagatggatacatggaagtttttaagaaattttcaagt |
24108734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 360 - 428
Target Start/End: Original strand, 14367030 - 14367098
Alignment:
| Q |
360 |
tttggttaatttaaggatttgtttatttacttcaatatttggcaatttaagatgcttcagtcgcctttg |
428 |
Q |
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| T |
14367030 |
tttggttaatttaaggatttgtttatttacttcaatatttggcaatttaagatgcttcagttgcctttg |
14367098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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