View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9744_low_5 (Length: 394)
Name: NF9744_low_5
Description: NF9744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9744_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 383
Target Start/End: Original strand, 9216642 - 9217020
Alignment:
| Q |
7 |
gaaccgttgtgtgaacgacaatgaagtatttcagaccacctaacagcttgagcagactctgcagtaactc--gagtttgctgaatcaaggtgggatttga |
104 |
Q |
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| T |
9216642 |
gaaccgttgcatgaacgacaatgaagtatttcagaccacctaacagcttgagcagactctgcagtaactcttgagtttgctgaatccaggtgggatttga |
9216741 |
T |
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| Q |
105 |
acctgcttgcactatgtcatccacatagactaaccgggcaacaaaacaaaggtcaatacctttggtgaacaaggagtgatcaattgatgatttatggaag |
204 |
Q |
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| T |
9216742 |
acctgcttgcactatgtcatctacatagactaaccgggcaacaaaacaagggtcaatacctttggtgaacaaggagtgatcaattgatgatttatggaag |
9216841 |
T |
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| Q |
205 |
ccatgttgaataatggtggtggaaaatgtatgatatcattgtcttgatgcttgccataaaccatacaagaacttgttaagtttacataccatattctccc |
304 |
Q |
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| T |
9216842 |
ccatgttgaataatggtggtggaaaatgtatgatatcattgtcttaatgcttgccataaaccatacaagaacttgttaagtttacataccatattctccc |
9216941 |
T |
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| Q |
305 |
cctcactttgatatcgaagttacggatccaagtatatttcttcaaataggtctccattcaaaaacgcgttgttgatgtc |
383 |
Q |
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| T |
9216942 |
cctcactttgatatcgaagcgacaaatccaagtatatttcttcaaataggtctccattcaaaaacgcgttcttgatgtc |
9217020 |
T |
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