View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9744_low_6 (Length: 391)
Name: NF9744_low_6
Description: NF9744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9744_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 5 - 379
Target Start/End: Original strand, 18459709 - 18460085
Alignment:
| Q |
5 |
tttggtgttggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
104 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
18459709 |
tttggtggtggtggtgggggattcacggatttggcatttccgtcatcatgcgcatcttcaagtaaaagaagcgtcaacacaataggaggttcattctaag |
18459808 |
T |
|
| Q |
105 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtcaaaa-atgaacacagtttctacactggttttgtccaa |
203 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| | ||| | |
|
|
| T |
18459809 |
gtggatcatcatgtggggcatcaacaggaacaaccatgactgaaagcagtgcgaagcagagtcaaaagatgaacacagtttctgcactggttctatccga |
18459908 |
T |
|
| Q |
204 |
aattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgcc-nnnnnn |
302 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18459909 |
aattcaaaatccggaacgcatgaatgcagtccggatttgaaattccagaacgtttcagtacagatcatatgacgtgatcaaaaggaaatcgccaaaaaaa |
18460008 |
T |
|
| Q |
303 |
ncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
379 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18460009 |
acaaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
18460085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 368
Target Start/End: Original strand, 24133346 - 24133438
Alignment:
| Q |
273 |
tgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaac |
368 |
Q |
| |
|
|||| |||||||||||||| |||| |||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24133346 |
tgacatgatcaaaaggaaagcgcctagaaatcgaatgagggaaggtttat---atacacattacctttgaattcagtcgaaaatgatgatgttaac |
24133438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 14 - 378
Target Start/End: Original strand, 6162002 - 6162364
Alignment:
| Q |
14 |
ggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcat |
113 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6162002 |
ggtggtgggggattctcggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcagcaacacaataggaggttcattctgaggtggatcat |
6162101 |
T |
|
| Q |
114 |
catgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaa |
212 |
Q |
| |
|
||| | ||| ||||| |||||||||| |||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||| | ||| ||| ||||| |
|
|
| T |
6162102 |
catttaggggatcaacaggaacaaccatgactgaaaacagtgcgaagtagagtcagaaaatgaacacagtttctgcactggtgctctccggaatccgaaa |
6162201 |
T |
|
| Q |
213 |
tccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggg |
312 |
Q |
| |
|
||| |||||||||||||||| ||||||| | ||||| |||| | || | | |||||| ||||||||||||| ||||||| ||| | ||| |
|
|
| T |
6162202 |
tccagaacgcatgaatgcagaccggatttaacattccggaacagtacaatgaatatcatacaacgtgatcaaaagttaatcgcctaaaaatcgactaggg |
6162301 |
T |
|
| Q |
313 |
gaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgat |
378 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
6162302 |
aaaggt---ttatatacacattacctttgcattcagacgaaaatgatgatgttaaccccccttgat |
6162364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 5 - 379
Target Start/End: Original strand, 52972390 - 52972762
Alignment:
| Q |
5 |
tttggtgttggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
104 |
Q |
| |
|
||||||| |||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| ||||| ||||| ||| || |
|
|
| T |
52972390 |
tttggtggcggtgatgggggattctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagagacaacacattaggatgttcaatctcag |
52972489 |
T |
|
| Q |
105 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaa |
203 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||| | ||| ||| ||||| | || ||||| |||||||||||||||||| | |||| ||||| |
|
|
| T |
52972490 |
gtggatcaacatttggggcatcaaccaaaacaaccatatctgtaaacagtgc-agacatagtcagaaaatgaacacagtttctgtattggtgcagtccag |
52972588 |
T |
|
| Q |
204 |
aattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgt-ttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnn |
302 |
Q |
| |
|
| ||| ||||||||||||||||||| |||| | ||||| | | ||| |||| | | |||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
52972589 |
atttcaaaatccggaacgcatgaatccagtccagattttacagtcc-gaacatgtagagtacaaatcatatgacgtgatcaaaaagaaatcgcctaaaaa |
52972687 |
T |
|
| Q |
303 |
ncgaat-gggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
379 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52972688 |
acgaatggggggaaggt---ttatacacacattacctttgcattcagtcgaaaatgatgatgttaaccccccttgatg |
52972762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 54586689 - 54586320
Alignment:
| Q |
8 |
ggtgttggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtg |
107 |
Q |
| |
|
|||| |||||||||||| ||| |||||||||||||||| |||| |||| |||||||||||||||||| ||||||||| ||| || ||||| ||| || || |
|
|
| T |
54586689 |
ggtggtggtggtgggggcttctcggatttggcatttcccgaattatgcacatcttcaagtaaaagaaccggcaacacgatatgatgttcaatctcagctg |
54586590 |
T |
|
| Q |
108 |
gatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaat |
206 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| | |||||||| | ||||||||||||||| |||||||||| | ||| | |||||| |||| | | | |
|
|
| T |
54586589 |
gatcatcatttggggcatcaaccggaacaaccataactgaaaacaatgcgaagcagagtcagaaaatgaacataatttttgtactggtgttgttcggatt |
54586490 |
T |
|
| Q |
207 |
tcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncga |
306 |
Q |
| |
|
| |||||| ||| ||||||||||| | || || | || | || | ||||| ||||| |||||||||||||||||||||| ||| ||| |
|
|
| T |
54586489 |
actaaatcctaaacatatgaatgcagtcccgaatttatttttcggataaatccagtacagatcgtatgacgtgatcaaaaggaaattgcctaaaaaacga |
54586390 |
T |
|
| Q |
307 |
atgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
379 |
Q |
| |
|
||||| ||| | ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
54586389 |
atgggagaa---attttatatacacactacctttgcattcagacgaaaatgatgatgttaaccccccttgatg |
54586320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 15 - 378
Target Start/End: Original strand, 23710487 - 23710848
Alignment:
| Q |
15 |
gtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatc |
114 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||||| | ||||||||||||||||||||||||||| |||| |||||||| | | |||||||||||| |
|
|
| T |
23710487 |
gtggtgggggattctcagatttggcattcccggaatcatacacatcttcaagtaaaagaagcggcaacataatatgaggttcaatttcaggtggatcatc |
23710586 |
T |
|
| Q |
115 |
atgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaat |
213 |
Q |
| |
|
|| ||||||||||| | ||||||| | || |||| |||| | ||| ||||| |||||||||| ||||| | |||||| ||| | |||||||||| |
|
|
| T |
23710587 |
atttggggcatcaaccgaaacaaccatatctaaaaacagtgtcatgcatagtcagaaaatgaacatagtttatgtactggtgcagtctagaattcgaaat |
23710686 |
T |
|
| Q |
214 |
ccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatggggg |
313 |
Q |
| |
|
|||||||||||||||||||| || |||| | |||| ||||||| ||||| | |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23710687 |
ccggaacgcatgaatgcagtccgaatttcatattctggaacgttacagtacatatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatggggg |
23710786 |
T |
|
| Q |
314 |
aaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgat |
378 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
23710787 |
aaggt---ttatatacacattacctttgcattcagacgaaaatgatgatgttaaccccccttgat |
23710848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 33 - 384
Target Start/End: Complemental strand, 754337 - 753988
Alignment:
| Q |
33 |
atttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggggcatcaagagg |
132 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||||| ||| ||||||||||| || |
|
|
| T |
754337 |
atttggcattcccggaatcatgtgcatcttcaagtaaaagaagcagcaacacaatagaaggttcaatcttaggtggatcagcatttggggcatcaaccgg |
754238 |
T |
|
| Q |
133 |
aacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgcatgaatgca |
231 |
Q |
| |
|
||||||| | || |||| | || | ||| ||| | |||||||||||||||||| ||||| || | ||| ||||| |||||||||||||||| |
|
|
| T |
754237 |
aacaaccatatctaaaaacattgacaggcatagttagaaaatgaacacagtttctgtgctggtgcactctggatttcaaaatctggaacgcatgaatgca |
754138 |
T |
|
| Q |
232 |
gttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacac |
331 |
Q |
| |
|
|| ||||||| | |||| ||||| | ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
754137 |
gtccggatttcatattctggaacggtacagtacagatcatatgaagtgatcaaaaggaaatcgcctaaaaaacgaatgggggaaggt---ttatatacac |
754041 |
T |
|
| Q |
332 |
attacctttgcattcagtcgaaaatgatgatgttaacctcccttgatgtccat |
384 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| |||| ||||||||| |||| |
|
|
| T |
754040 |
attatctttgcattcagtcaaaaatgatgatgtcaaccccccttgatggccat |
753988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 5 - 379
Target Start/End: Original strand, 9173677 - 9174034
Alignment:
| Q |
5 |
tttggtgttggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
104 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||| ||| || |
|
|
| T |
9173677 |
tttggtggtggtggtgggggattctcggatttggcattaccggaatcatgcgtatcttcaagtaaaagaagtggcaacacattaggatgttcaatctcag |
9173776 |
T |
|
| Q |
105 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaa |
203 |
Q |
| |
|
|||||||| ||| |||| ||||| ||| ||||| | ||||||| ||||| | ||| ||||| |||||||||| ||||||| |||||| ||| |
|
|
| T |
9173777 |
gtggatcaacatttgggatatcaaccggagcaaccatatctgaaaacagtgc-aggcatagtcagaaaatgaacatagtttctgtactggtgcagtctgg |
9173875 |
T |
|
| Q |
204 |
aattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnn |
303 |
Q |
| |
|
| || |||||||||||||||||||| ||| ||| || || | |||| ||||||||||||||||||||||| ||||| || |
|
|
| T |
9173876 |
attttgaaatccggaacgcatgaatccag--------------tccggaccggtagagtacagatcatatgacgtgatcaaaagaaaatctcctaaaaaa |
9173961 |
T |
|
| Q |
304 |
cgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
379 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| |
|
|
| T |
9173962 |
cgaatgggggaaggt---ttatatacacattacctttgcattcagtcaaaaatgatgatgttaaccccctttgatg |
9174034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 221 - 379
Target Start/End: Complemental strand, 14822616 - 14822461
Alignment:
| Q |
221 |
gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt |
320 |
Q |
| |
|
||||||||||||| ||||||| | |||| ||| ||| ||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
14822616 |
gcatgaatgcagtccggatttaattttccggaatgttccagtacggatcatatgatgtgattaaaaggaaatcgcttaaaattcgaatgggggaaggttt |
14822517 |
T |
|
| Q |
321 |
attatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
379 |
Q |
| |
|
|| ||||||||||||||| |||| || | |||||||||||||||||| ||||||||| |
|
|
| T |
14822516 |
at---atacacattacctttacatttagacaaaaatgatgatgttaaccccccttgatg |
14822461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 379
Target Start/End: Original strand, 9710464 - 9710572
Alignment:
| Q |
267 |
atcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgtta |
366 |
Q |
| |
|
|||||||||| |||||||||| |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9710464 |
atcatatgacatgatcaaaagaaaattgcctaaaaaatgaatgggggaaggtt----atatacacattacctttgcattcagtcgaaaatgatgatgtta |
9710559 |
T |
|
| Q |
367 |
acctcccttgatg |
379 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
9710560 |
accccccttgatg |
9710572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 5 - 379
Target Start/End: Complemental strand, 38619536 - 38619165
Alignment:
| Q |
5 |
tttggtgttggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
104 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||| || ||||||||||| ||| || |
|
|
| T |
38619536 |
tttggtggtggtggtgggggattctcggatttggcattaccggaatcatgcgcgtcttcaagtaaaagaagcggcaacgcattaggaggttcaatctcag |
38619437 |
T |
|
| Q |
105 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtc-aaaaatgaacacagtttctacactggttttgtccaa |
203 |
Q |
| |
|
|||||||| ||| || |||||||| ||||||||| | ||||||| ||| | | ||| |||| ||||||||||||||||||| |||||| ||| | |
|
|
| T |
38619436 |
gtggatcaacatttgaggcatcaatcggaacaaccatatctgaaaacagtac-aggcatagtcaaaaaatgaacacagtttctgtactggtgcagtctag |
38619338 |
T |
|
| Q |
204 |
aattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnn |
303 |
Q |
| |
|
| |||||||||| ||||||||||| |||| |||||| | | ||| ||| | | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38619337 |
atttcgaaatccataacgcatgaatccagtccggattgcatagtccggaaaggtacagtacagatcatatgacgtgatcaaaaggaaatcgcctaaaaaa |
38619238 |
T |
|
| Q |
304 |
cgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
379 |
Q |
| |
|
| ||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38619237 |
caaattgggaaaggt---ttatatacacattacctttgcattcagtcgaaaatgatgatgttaaccccccttgatg |
38619165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 20 - 379
Target Start/End: Original strand, 17312488 - 17312844
Alignment:
| Q |
20 |
gggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtg |
119 |
Q |
| |
|
||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||| ||| || |
|
|
| T |
17312488 |
gggggtttctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagcggcaacacattaggatgttcaatctcaggtggatcaacatttg |
17312587 |
T |
|
| Q |
120 |
gggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccgga |
218 |
Q |
| |
|
||||||||| |||||||| | ||||||| ||||| ||||| ||||| |||||||||||||||||| |||||| |||| | ||||||||| | | |
|
|
| T |
17312588 |
gggcatcaaccagaacaaccatatctgaaaacagtgc-aagcatagtcagaaaatgaacacagtttctgtactggtgcagtccggatttcgaaatctgaa |
17312686 |
T |
|
| Q |
219 |
acgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggt |
318 |
Q |
| |
|
|| | |||| |||||||||||| | | || || || | |||| | |||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
17312687 |
acacgtgaacccagttcggatttcagagtctggaccggtagagtacaaatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatgggagaaggt |
17312786 |
T |
|
| Q |
319 |
ttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
17312787 |
---ttatatacacattacctttgcattcagtcgaaaatgatgatgttaaccccctttgatg |
17312844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 9635722 - 9635351
Alignment:
| Q |
8 |
ggtgttggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtg |
107 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| ||| ||| ||||| |
|
|
| T |
9635722 |
ggtggtggtggtgggggattctcggatttggcattttcggaatcatgcacatcttcaagtaaaagaaccggcaacacaataggaggatcaatctcaggtg |
9635623 |
T |
|
| Q |
108 |
gatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaat |
206 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| | |||||||| ||||||||||||| ||| ||||||| |||||||| | |||||| |||| | | | |
|
|
| T |
9635622 |
gatcatcatttggggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaatgagcacagtttttgtactggtgttgttcggatt |
9635523 |
T |
|
| Q |
207 |
tcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncga |
306 |
Q |
| |
|
||||| | || ||||||||||||| | ||||| | || | | | | ||||| ||||||||||||||||||||||||||| |||| | | |
|
|
| T |
9635522 |
aaaaaatctgaaatgcatgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctaaaattcaa |
9635423 |
T |
|
| Q |
307 |
atgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatga--tgttaacctcccttgatg |
379 |
Q |
| |
|
|| |||||||| |||||||||||||| ||||||| |||| ||||||||||| |||||||||||||||||| |
|
|
| T |
9635422 |
ataagggaaggt---ttatatacacattatctttgcactcagatgaaaatgatgatgtgttaacctcccttgatg |
9635351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 19991633 - 19991679
Alignment:
| Q |
322 |
ttatatacacattacctttgcattcagtcgaaaatgatgatgttaac |
368 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19991633 |
ttatatacacattacctttgcattcattcgaaaatgatgatgttaac |
19991679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 368
Target Start/End: Complemental strand, 26262739 - 26262693
Alignment:
| Q |
322 |
ttatatacacattacctttgcattcagtcgaaaatgatgatgttaac |
368 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||| ||||||| |
|
|
| T |
26262739 |
ttatatacacattacctttgcattcagacaaaaatgatgttgttaac |
26262693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 5 - 369
Target Start/End: Original strand, 41257304 - 41257665
Alignment:
| Q |
5 |
tttggtgttggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
104 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| || |
|
|
| T |
41257304 |
tttggtggtggtggtgggggattctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagcggcaacgcattaggaggttcaatctcag |
41257403 |
T |
|
| Q |
105 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaa |
203 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||| | ||||||| ||||| | ||| ||||| ||||| |||||||||||| |||||| |||| |
|
|
| T |
41257404 |
gtggatcaacatttggggcatcaatcggaacaaccatatctgaaaacagtgc-aggcatagtcagaaaataaacacagtttctgtactggtgcagtccgg |
41257502 |
T |
|
| Q |
204 |
aattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnn |
303 |
Q |
| |
|
| |||||||||| |||||||||||| || | | |||| | | ||| || | | ||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
41257503 |
atttcgaaatccagaacgcatgaatccaatccagattgcatagtccgaaaaggtacagtacatatcatatgacgtgatcaaaaggaaatcgcctaaaaaa |
41257602 |
T |
|
| Q |
304 |
cgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacc |
369 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41257603 |
cgaatggggaaaggt---ttatatacacattacctttgcattcagtcgaaaatgatgatgttaacc |
41257665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 5 - 379
Target Start/End: Complemental strand, 19215819 - 19215449
Alignment:
| Q |
5 |
tttggtgttggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
104 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||| ||| || |
|
|
| T |
19215819 |
tttggtggtggtggtgggggattctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagcggcaatgcattaagaggttcagtctcag |
19215720 |
T |
|
| Q |
105 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaa |
203 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||| ||||||| ||||| | ||| ||||| |||||| ||||||||||| |||| | || || |
|
|
| T |
19215719 |
gtggatcaacatttggggcatcaaccggaacaaccacatctgaaaacagtgc-aggcatagtcagaaaatg-acacagtttctgtactgatgcagttcag |
19215622 |
T |
|
| Q |
204 |
aattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnn |
303 |
Q |
| |
|
| |||||| |||||||||||||||| |||| |||||| | | ||| ||| | | || || ||||||||||||||||||||||| |||| ||| |
|
|
| T |
19215621 |
atttcgaactccggaacgcatgaatccagtccggattgcatagtcctgaaaggtacaatacagatcatatgacgtgatcaaaagaaaattgcctaaaaaa |
19215522 |
T |
|
| Q |
304 |
cgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
379 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19215521 |
ctaatgggggaaggt---ttatatacacattacctttgcattcagtcgaaaatgatgatgttaaccccccttgatg |
19215449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 15889450 - 15889269
Alignment:
| Q |
15 |
gtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatc |
114 |
Q |
| |
|
|||||||||||||| || |||||| | ||| ||||||||| |||||||||||||||||| | |||| | |||||| ||||| ||| || ||||||||| |
|
|
| T |
15889450 |
gtggtgggggattctcgaatttggaaattcaagaatcatgcacatcttcaagtaaaagaaccagcaaagcgataggatgttcaatctcagctggatcatc |
15889351 |
T |
|
| Q |
115 |
atgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggtt |
195 |
Q |
| |
|
|| ||||||||||| ||||||||| | |||||||| ||||| |||| ||||| |||||||||| ||||||| ||||||| |
|
|
| T |
15889350 |
atttggggcatcaaccggaacaaccataactgaaaacagtgccaagcttagtcagaaaatgaacatagtttctgtactggtt |
15889269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 5 - 379
Target Start/End: Complemental strand, 50515623 - 50515252
Alignment:
| Q |
5 |
tttggtgttggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
104 |
Q |
| |
|
||||||| || ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || | | ||||||| ||| || |
|
|
| T |
50515623 |
tttggtggtgttggtgggggattctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagcggcaatgcatttgaaggttcaatctcag |
50515524 |
T |
|
| Q |
105 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtc-aaaaatgaacacagtttctacactggttttgtccaa |
203 |
Q |
| |
|
|||||||| ||| ||||| ||||| ||||||||| | |||||| ||||| | ||| |||| ||||||||||||||||| | |||||| | |||| |
|
|
| T |
50515523 |
gtggatcaacatttggggtatcaaccggaacaaccatatatgaaaacagtgc-atgcatagtcaaaaaatgaacacagtttttgtactggtgtagtccgg |
50515425 |
T |
|
| Q |
204 |
aattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnn |
303 |
Q |
| |
|
| |||||| ||||||| |||||||| |||| |||||| | | ||| ||| | | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
50515424 |
atttcgaattccggaaagcatgaatccagtccggattgcatagtccggaaaggtacagtacagatcatatgacgtgatcaaaaggaaatcgcctaaaaaa |
50515325 |
T |
|
| Q |
304 |
cgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
379 |
Q |
| |
|
| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50515324 |
caaatggggaaaggt---ttatatacacattacctttgcattcagtcgaaaatgatgatgttaaccccccttgatg |
50515252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 13 - 379
Target Start/End: Original strand, 44713052 - 44713415
Alignment:
| Q |
13 |
tggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatca |
112 |
Q |
| |
|
|||||||||||||||| | ||| ||||||| ||| |||||||| ||||||||||||||| ||| ||||||||| ||||||||| | ||| | |||||||| |
|
|
| T |
44713052 |
tggtggtgggggattctcagatatggcattaccgtaatcatgcacatcttcaagtaaaataagtggcaacacattaggaggttgaatctcatgtggatca |
44713151 |
T |
|
| Q |
113 |
tcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaa |
211 |
Q |
| |
|
||| ||||||||||| ||||||||| | ||||||| | ||| | ||| ||||| |||||||||||||||| | |||||| |||| || ||| || |
|
|
| T |
44713152 |
acatttggggcatcaaccggaacaaccatatctgaaaacaatgc-aggcatagtcagaaaatgaacacagtttttgtactggtgcagtcctaatttctaa |
44713250 |
T |
|
| Q |
212 |
atccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatggg |
311 |
Q |
| |
|
||||||| |||||||| ||| | |||| | | ||| ||| | | ||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44713251 |
ctccggaatgcatgaatctagtccagattgcatagtccggaaaggtacagtacagatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatggg |
44713350 |
T |
|
| Q |
312 |
ggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
379 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
44713351 |
gaaaggtttat---atacacattacctttgcattcaaccgaaaatgatgatgttaaccccccttgatg |
44713415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 103 - 379
Target Start/End: Original strand, 45910454 - 45910727
Alignment:
| Q |
103 |
aggtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtcc |
201 |
Q |
| |
|
|||||||||| ||| |||||||| || ||||||||| | ||||||| ||||| | ||| ||||| |||||||||||||||||| |||||| |||| |
|
|
| T |
45910454 |
aggtggatcaacatttggggcattaaccggaacaaccatatctgaaaacagtgc-aggcatagtcagaaaatgaacacagtttctgtactggtgcagtcc |
45910552 |
T |
|
| Q |
202 |
aaaattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnn |
301 |
Q |
| |
|
|| |||||| ||| |||||||||||| |||| |||||| | | ||| ||| | | ||||| |||||||||||| |||||||||||||||| || |
|
|
| T |
45910553 |
gaatttcgaactccagaacgcatgaatccagtccggattgcatagtccggaaaggtacagtacagatcatatgacatgatcaaaaggaaatcacctaaaa |
45910652 |
T |
|
| Q |
302 |
nncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
379 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
45910653 |
aatgaatggggaaaggt---ttatatatacattacctttgcattcagtcaaaaatgatgatgctaaccccccttgatg |
45910727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 322 - 367
Target Start/End: Original strand, 16768021 - 16768066
Alignment:
| Q |
322 |
ttatatacacattacctttgcattcagtcgaaaatgatgatgttaa |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16768021 |
ttatatacacattacctttgcattcagtcgagaatgatgatgttaa |
16768066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 10548379 - 10548339
Alignment:
| Q |
328 |
acacattacctttgcattcagtcgaaaatgatgatgttaac |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10548379 |
acacattacctttgcattcagtcgaaaatgatgatgttaac |
10548339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 6851381 - 6851438
Alignment:
| Q |
322 |
ttatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
379 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||| || ||||||||| |
|
|
| T |
6851381 |
ttatatacacattacctttgcagtcagacgaaaatgatgatgtttacaccccttgatg |
6851438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 5 - 368
Target Start/End: Original strand, 13850662 - 13851022
Alignment:
| Q |
5 |
tttggtgttggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
104 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| | ||| || |
|
|
| T |
13850662 |
tttggtggtggtggtgggggattctcggatttggcattaccgaaatcatgcgcatcttcaagtaaaagaagcggcaacacattaggaggttaaatctcag |
13850761 |
T |
|
| Q |
105 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaa |
203 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||| | || |||| | ||| | ||| ||||| |||||||||||||||||| |||||| |||| |
|
|
| T |
13850762 |
gtggatcaacatttggggcatcaactggaacaaccatatctaaaaacaatgc-atgcatagtcagaaaatgaacacagtttctgtactggtgcagtccgg |
13850860 |
T |
|
| Q |
204 |
aattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnn |
303 |
Q |
| |
|
| | |||| ||||||| ||||||| |||| |||||| | | ||| ||| | | ||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
13850861 |
attacgaactccggaaaccatgaatccagtgcggattgcatagtccggaaaggtacagtacaaatcatatgacgtgatcaaaaggaaatcgcc-taaaaa |
13850959 |
T |
|
| Q |
304 |
cgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaac |
368 |
Q |
| |
|
|||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13850960 |
cgaatgggggaaaggt--ttatatacacattacctttgcattcagtcgaaaatgatgatgttaac |
13851022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 379
Target Start/End: Complemental strand, 25761521 - 25761158
Alignment:
| Q |
13 |
tggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatca |
112 |
Q |
| |
|
|||||||||||||| | | ||||||||||| |||||| |||||||||||||||||||||||||||| ||| || ||||||||||| ||| |||||||||| |
|
|
| T |
25761521 |
tggtggtgggggatactcagatttggcattaccggaaccatgcgcatcttcaagtaaaagaagcggaaacgcattaggaggttcaatctcaggtggatca |
25761422 |
T |
|
| Q |
113 |
tcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaa |
211 |
Q |
| |
|
||| ||||||||||| ||||||||| | ||||||| ||||| | ||| ||||| |||||||||||||||| | |||||| |||| | |||||| |
|
|
| T |
25761421 |
acatttggggcatcaaccggaacaaccatatctgaaaacagtgc-aggcatagtcagaaaatgaacacagtttttgtactggtgcagtccggatttcgaa |
25761323 |
T |
|
| Q |
212 |
atccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatggg |
311 |
Q |
| |
|
|||||||||||||||| |||| ||||| | | ||| ||| | | ||||| | ||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
25761322 |
ctccggaacgcatgaatccagtctggattgcatagtccggaaaggtacagtacatatcatatgacgtgatcaaaagaaaatagcctaaaaaatcaatggg |
25761223 |
T |
|
| Q |
312 |
ggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
379 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
25761222 |
gaaaggt---ttatatacacattacctttgcattcagtcaaaaatgatgatgttaaccccccttgatg |
25761158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 38965934 - 38965566
Alignment:
| Q |
8 |
ggtgttggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtg |
107 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||| |||||||| |||||| ||||| ||| || || |
|
|
| T |
38965934 |
ggtggtggtagtgggggattctcggatttggcaattctggaatcatgcacatcttcaagtaaaagaaccggcaacatgataggatgttcaatctcagctg |
38965835 |
T |
|
| Q |
108 |
gatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaat |
206 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| | | ||||| ||||| ||||| ||||| |||||||||||||||||| |||||| | |||| | | |
|
|
| T |
38965834 |
gatcatcatttggggcatcaaccggaacaaccataattgaaatcagtgccaagcatagtcagaaaatgaacacagtttctgtactggtgtagtccggatt |
38965735 |
T |
|
| Q |
207 |
tcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncga |
306 |
Q |
| |
|
||||||||| ||| ||||||||| ||| |||| || |||| |||| |||||| | |||||||||| |||||||||| |||||||| ||| |
|
|
| T |
38965734 |
tcgaaatccagaatgcatgaatgtagtccggaattcgttttccggaac-agtcagtacatatcatatgacatgatcaaaagaaaatcgcctaaaaaacga |
38965636 |
T |
|
| Q |
307 |
atgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
379 |
Q |
| |
|
|||| ||||||| ||||||||||||||| |||| |||||| |||||||||||||||||| | ||||||||| |
|
|
| T |
38965635 |
atggaggaaggt---ttatatacacattacatttgaattcagacgaaaatgatgatgttaatcccccttgatg |
38965566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 5 - 379
Target Start/End: Original strand, 20236122 - 20236491
Alignment:
| Q |
5 |
tttggtgttggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
104 |
Q |
| |
|
||||||| |||||||||||||||| || |||||||||| ||||||| || |||||||||||||||||||||| || ||||| |||||| | || | | | |
|
|
| T |
20236122 |
tttggtgatggtggtgggggattctcgtatttggcattaccggaataatacgcatcttcaagtaaaagaagccgcgacacattaggagatccaatatctg |
20236221 |
T |
|
| Q |
105 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaa |
203 |
Q |
| |
|
|||||| | ||| ||||||||||| ||| ||| | | ||||||| ||||| | ||| ||||| |||||||||| | ||| | |||||| |||| |
|
|
| T |
20236222 |
gtggattaacatttggggcatcaaccggagcaa-catatctgaaaacagtgc-aggcatagtcagaaaatgaacataatttatgtactggtgcagtccgg |
20236319 |
T |
|
| Q |
204 |
aattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnn |
303 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||| ||| ||| || | | || | |||||||||||||||||||||||||||||| |
|
|
| T |
20236320 |
atttcgaaatccggaacgcatgaatccagttcggatttcaaagtccggatctgaagattacatatcatatgacgtgatcaaaaggaaatcgcc-taaaaa |
20236418 |
T |
|
| Q |
304 |
cgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
379 |
Q |
| |
|
| ||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20236419 |
caaatcggggaaggt---ttatatacacattaccttagcattcagtcgaaaatgatgatgttaaccccccttgatg |
20236491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 34833843 - 34834024
Alignment:
| Q |
5 |
tttggtgttggtggtgggggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgag |
104 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||| || |
|
|
| T |
34833843 |
tttggtggtggtggtgggggattctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagcagcaacgcattaggaggttcaatcttag |
34833942 |
T |
|
| Q |
105 |
gtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttct |
186 |
Q |
| |
|
|| ||||| || ||||||||||| ||||||||| | ||||||| ||||| | | | ||||| |||||||||||||||||| |
|
|
| T |
34833943 |
gtagatcaaaatttggggcatcaatcggaacaaccatatctgaaaacagtgc-atgtatagtcagaaaatgaacacagtttct |
34834024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 267 - 379
Target Start/End: Original strand, 23352198 - 23352307
Alignment:
| Q |
267 |
atcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgtta |
366 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23352198 |
atcatatgacgtgatcaaaaggaaattgcctaaaaaacgaatggggaaaggtttat---atacacattacctttgcattcagtcgaaaatgatgatgtta |
23352294 |
T |
|
| Q |
367 |
acctcccttgatg |
379 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
23352295 |
accgcccttgatg |
23352307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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