View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9744_low_8 (Length: 344)
Name: NF9744_low_8
Description: NF9744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9744_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 325
Target Start/End: Original strand, 45945560 - 45945859
Alignment:
| Q |
8 |
aagcagagatataataaaaaagacattttactcaaagacatgtacctcaaagatacgtagtttggagtaattgatgacatcatatgccatagcaaattcg |
107 |
Q |
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| T |
45945560 |
aagcaaagatataataaaaaagacattttactcaaagacatgtacctcgaagatacgtagtttggagtaattgatgacataatatgccatagcaaattcg |
45945659 |
T |
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| Q |
108 |
gtttggttggctggagggtacacaggatcaatctccttaacaaagcaaccttgtgaaacaaggatcttacgatgttcctcgggaacatcaggttcttcgg |
207 |
Q |
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| T |
45945660 |
gtttggttggctggagggtacacaggagcaatctccttaacaatgcaaccttgtgaaacaaggatcttacgat------------------gttcttcag |
45945741 |
T |
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| Q |
208 |
gaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaaaccaacaacacctttgatgtaatcagcgtttcc |
307 |
Q |
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| T |
45945742 |
gaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaaaccaacaacacctttgatgtaatcagcgtttcc |
45945841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 55221583 - 55221483
Alignment:
| Q |
60 |
atacgtagtttggagtaattgatgacatcatatgccatagcaaattcggtttggttggctggagggtacacaggatcaatctccttaacaaagcaacctt |
159 |
Q |
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| T |
55221583 |
atacgtagtttggagtagttgatgacataataagccatagcaaattgggtttgattcttaggagggtaaacaggtgcaatctctctaacaatgcaacctt |
55221484 |
T |
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| Q |
160 |
g |
160 |
Q |
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| T |
55221483 |
g |
55221483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 55221397 - 55221336
Alignment:
| Q |
264 |
cctttggctaaaccaacaacacctttgatgtaatcagcgtttccagcaaggaaagtcacaaa |
325 |
Q |
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||||||||||||||||| |||||||||| || ||| | |||||| ||||||| |||||||| |
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| T |
55221397 |
cctttggctaaaccaaccacacctttgacatagtcaccatttccaacaaggaaggtcacaaa |
55221336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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