View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9745_high_9 (Length: 236)
Name: NF9745_high_9
Description: NF9745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9745_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 25492840 - 25492606
Alignment:
| Q |
1 |
aattaacgatggtattggtaaataattttcaattaatattgtcatatcatgtttaagaagataattacctctcagggattggagaattatatattgnnnn |
100 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
25492840 |
aattaacgatggtattagtaaataattttcaattaatattgtcatatcatgtttaagaagataattacctctcagggataggagaattatattgtgtttt |
25492741 |
T |
|
| Q |
101 |
nnnnnnncttcatcatggactttaaggaataaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25492740 |
tttatttcttcatcatggactttaagtaataaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcacaa |
25492641 |
T |
|
| Q |
201 |
acatgccaattgtaaggaagttggattttaggctc |
235 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
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| T |
25492640 |
acataccaattgtaaggaagttggattttaggctc |
25492606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 25501218 - 25500985
Alignment:
| Q |
1 |
aattaacgatggtattggtaaataattttcaattaatattgtcatatcatgtttaagaagataattacctctcagggattggagaattatatattgnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| || |
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| T |
25501218 |
aattaacgatggtattggtaaataattttcatataatattgtcatatcatgtttaagaagataattacctc--agggctaggagaattatattgtgtttt |
25501121 |
T |
|
| Q |
101 |
nnnnnnncttcatc-atggactttaaggaataaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcaga |
199 |
Q |
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| | || |||||||||||| || |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25501120 |
ttttcttcattatggatggactttaagtaaaaaggccaagattaaagagattagttactttccccttggcttgtttcatctcgacttcatcttcatcaga |
25501021 |
T |
|
| Q |
200 |
aacatgccaattgtaaggaagttggattttaggctc |
235 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
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| T |
25501020 |
aacataccaattgtaaggaagttggattttaggctc |
25500985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 131 - 235
Target Start/End: Complemental strand, 25642509 - 25642405
Alignment:
| Q |
131 |
aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggatttta |
230 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
25642509 |
aaggccaagattaaagagatcagtttctttccccttggctccatccttctcggcttcatcttcatcagaaacaaaccaattgtaagggagttggatttta |
25642410 |
T |
|
| Q |
231 |
ggctc |
235 |
Q |
| |
|
||||| |
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|
| T |
25642409 |
ggctc |
25642405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 25450055 - 25449963
Alignment:
| Q |
131 |
aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttg |
223 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| | ||||| |||||||||| | |||||| ||||||||||||| |||| |
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| T |
25450055 |
aaggccaagattaaagagatcagtttccttccccttggcttcatctttctcggcttcatcttctttagaaactaaccaattgtaaggatgttg |
25449963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 25473844 - 25473944
Alignment:
| Q |
131 |
aaggccaagattaaagagatcagtttctttccccttggcttgtttca-tctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggatttt |
229 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| || | ||| |||||| | |||||| | |||||| |||||||||||||||||||||||| |
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| T |
25473844 |
aaggccaagattaaagagatcggtttcttttcccttgg-ttctatcattctcgattgaatcttcgttagaaactaaccaattgtaaggaagttggatttt |
25473942 |
T |
|
| Q |
230 |
ag |
231 |
Q |
| |
|
|| |
|
|
| T |
25473943 |
ag |
25473944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 25431184 - 25431288
Alignment:
| Q |
131 |
aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggatttta |
230 |
Q |
| |
|
||||||||||||| ||||| || |||| |||| ||||||| | | ||||| ||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
25431184 |
aaggccaagattagagagaccaatttccttccgcttggctgcatccttctcggcttcatctttgtcagaaactaaccaattgtaaggaagttggattttc |
25431283 |
T |
|
| Q |
231 |
ggctc |
235 |
Q |
| |
|
||||| |
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|
| T |
25431284 |
ggctc |
25431288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 25429282 - 25429199
Alignment:
| Q |
152 |
agtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggattttaggctc |
235 |
Q |
| |
|
||||||||| ||||| | || ||| ||||||||| ||||||||||||||| ||||||||||||| ||| |||||||||||| |
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|
| T |
25429282 |
agtttctttgcccttagattccttcgtctcgactttatcttcatcagaaactaaccaattgtaaggatgttagattttaggctc |
25429199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 25450155 - 25450102
Alignment:
| Q |
18 |
gtaaataattttcaattaatattgt--catatcatgtttaagaagataattacc |
69 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
25450155 |
gtaaatagttttcaattaatattgtggcatatcatgtttaagaacataattacc |
25450102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 25429385 - 25429355
Alignment:
| Q |
40 |
tgtcatatcatgtttaagaagataattacct |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
25429385 |
tgtcatatcatgtttaagaagataattacct |
25429355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 495153 - 495257
Alignment:
| Q |
131 |
aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggatttta |
230 |
Q |
| |
|
|||||| ||||||||||||| ||||||| |||||||||| || |||| |||||||||||||||||||| ||||||||||||||| | ||||||| |
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|
| T |
495153 |
aaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcatcagaaactgaccaattgtaaggaagcttgatttta |
495252 |
T |
|
| Q |
231 |
ggctc |
235 |
Q |
| |
|
||||| |
|
|
| T |
495253 |
ggctc |
495257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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