View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9745_low_1 (Length: 656)
Name: NF9745_low_1
Description: NF9745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9745_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 213 - 652
Target Start/End: Complemental strand, 32433516 - 32433076
Alignment:
| Q |
213 |
tgaattaaggaactatcaacaatgtttcaaaaccaactcaataaattttctttaaccttacctccttagcaagatgagcnnnnnnn-gcgacgagagtgg |
311 |
Q |
| |
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|||||||||||||||| |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| | || ||||| || |
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| T |
32433516 |
tgaattaaggaactataaacaatctttcaaaaccaactaaacaaattttctttaaccttacctccttagcaagatgagcaaaaaaaagtgatgagagagg |
32433417 |
T |
|
| Q |
312 |
tgtttgctcagcaggcttaagaaccatagtacaaccagcagccaaacaaggagcagccttagcaaagaacatgatagttgggaaattccaaggtataatg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32433416 |
tgtttgctcagcaggcttaagaaccatagtacaaccagcagccaaacaaggagcagccttagcaaagaacataatagttgggaaattccaaggtataatg |
32433317 |
T |
|
| Q |
412 |
tgtccaacaacaccaataggctccatcaaggtatacatgtgaagattcctagaagttttgaacacttctccatgaactttatcggctgcaccggcatagt |
511 |
Q |
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| T |
32433316 |
tgtccaacaacaccaataggttccatcaaagtatacatgtgaagattcctagaagttttgaacacttctccgtgaactttatcagctgcaccggcgtagt |
32433217 |
T |
|
| Q |
512 |
aacgtaggatattggctgcttcgggtacatctactgtcttacaccaactgtatagtttccctccatcaattgtatccaatgctgctatttcttcttggtt |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32433216 |
aacgtaggatattggctgcttcgggtacatctactgtcttacaccaactgtatagtttccctccatcaattgtatccaatgctgctatttcttcttggtt |
32433117 |
T |
|
| Q |
612 |
ctgttcaattagggttgcccatttcaccataatctctgctc |
652 |
Q |
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| T |
32433116 |
ctgttcaattagggttgcccatttcaccataatctttgctc |
32433076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 32433888 - 32433740
Alignment:
| Q |
68 |
atcatattaagattgaacttttcagtttccgactttgaaaaccggattcaaagtataccaagttggaacgtgagctcttctatctagattggatggtcca |
167 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
32433888 |
atcatattaagattggacttttcactttccgactttgaaaaccggattcaaagtataccaagtcggaacgtgagctcttctatctagattggacggtcca |
32433789 |
T |
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| Q |
168 |
aattgcttgactatgatttctcttacgacaaggaatcaaaatccttgaa |
216 |
Q |
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|||||||||| ||||| ||||||||| ||||||||| ||||||||||| |
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| T |
32433788 |
aattgcttgattatgaattctcttaccgcaaggaatccaaatccttgaa |
32433740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 304 - 446
Target Start/End: Original strand, 32408399 - 32408541
Alignment:
| Q |
304 |
gagagtggtgtttgctcagcaggcttaagaaccatagtacaaccagcagccaaacaaggagcagccttagcaaagaacatgatagttgggaaattccaag |
403 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| || | || |||||||||| |
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| T |
32408399 |
gagagaggtgtttgttcagcaggcttaagaaccatagtacaaccagcagccaaagcaggagcaaccttagcagcaaacatagtactaggaaaattccaag |
32408498 |
T |
|
| Q |
404 |
gtataatgtgtccaacaacaccaataggctccatcaaggtata |
446 |
Q |
| |
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| T |
32408499 |
gaataatgtgtccaacgacaccgattggctccatcaaagtata |
32408541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 32433655 - 32433574
Alignment:
| Q |
94 |
ttccgactttgaaaaccggattcaaagtataccaagttggaacgtgagctcttctatctagattggatggtccaaattgcttga |
177 |
Q |
| |
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||||||||||||||| | |||||||| || || ||| |||||||||||||| ||||| |||||| |||||||||||||||| |
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| T |
32433655 |
ttccgactttgaaaatcagattcaaacta--cctagtcggaacgtgagctctcttatcttcattggacggtccaaattgcttga |
32433574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 637
Target Start/End: Original strand, 32408655 - 32408732
Alignment:
| Q |
560 |
tgtatagtttccctccatcaattgtatccaatgctgctatttcttcttggttctgttcaattagggttgcccatttca |
637 |
Q |
| |
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|||||||||| || |||| |||||||| |||||||||||||||||| ||| || ||||||| | ||||||||||| |
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| T |
32408655 |
tgtatagttttccagcatctattgtatctaatgctgctatttcttctatgttttgatcaattaagtctgcccatttca |
32408732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 291
Target Start/End: Original strand, 32408357 - 32408385
Alignment:
| Q |
263 |
tttaaccttacctccttagcaagatgagc |
291 |
Q |
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| T |
32408357 |
tttaaccttacctccttagcaagatgagc |
32408385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 310 - 446
Target Start/End: Complemental strand, 43619281 - 43619145
Alignment:
| Q |
310 |
ggtgtttgctcagcaggcttaagaaccatagtacaaccagcagccaaacaaggagcagccttagcaaagaacatgatagttgggaaattccaaggtataa |
409 |
Q |
| |
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||||||||||||||||| || | ||||| || || |||||||| || ||||| | |||| ||||||||| | ||| || || |||||||| |||| |
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| T |
43619281 |
ggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaaagaacagggaagtgggaaagttccaaggaataa |
43619182 |
T |
|
| Q |
410 |
tgtgtccaacaacaccaataggctccatcaaggtata |
446 |
Q |
| |
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||||||||||||||||||| || |||||||| ||||| |
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| T |
43619181 |
tgtgtccaacaacaccaattggttccatcaatgtata |
43619145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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