View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9745_low_10 (Length: 240)
Name: NF9745_low_10
Description: NF9745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9745_low_10 |
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| [»] scaffold0599 (1 HSPs) |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: scaffold0599 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 2847 - 3057
Alignment:
| Q |
12 |
ggtgttgaagatgatgtttggattggcaagaccctttacaggtaagaatcttaattttacattgaacgtgctgactcagatcattgactgcaaaacaatt |
111 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
2847 |
ggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagaatcttaattttacattgaacgtactgaatcagatcattgactgcaaaacaatt |
2946 |
T |
|
| Q |
112 |
tcacctttacctaatagcttagaactaagtaatagagtcttcactaccaaaatgatttagggtttaatactatatgcttctatttttctatttattttga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2947 |
tcacctttacctaatagcttagaactaagtaatagagtcttcactaccaaaaagatttagggtttaatactatatgcttctatttttctatttattttga |
3046 |
T |
|
| Q |
212 |
taggatgccgt |
222 |
Q |
| |
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||||||||||| |
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| T |
3047 |
taggatgccgt |
3057 |
T |
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Back To:
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Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 11911153 - 11911363
Alignment:
| Q |
12 |
ggtgttgaagatgatgtttggattggcaagaccctttacaggtaagaatcttaattttacattgaacgtgctgactcagatcattgactgcaaaacaatt |
111 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
11911153 |
ggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagaatcttaattttacattgaacgtcctgattcagatcattgactgcaaaacaatt |
11911252 |
T |
|
| Q |
112 |
tcacctttacctaatagcttagaactaagtaatagagtcttcactaccaaaatgatttagggtttaatactatatgcttctatttttctatttattttga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11911253 |
tcacctttacctaatagcttagaactaagtaatagagtcttcactaccaaaaagatttagggtttaatactatatgcttctatttttctatttattttga |
11911352 |
T |
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| Q |
212 |
taggatgccgt |
222 |
Q |
| |
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||||||||||| |
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|
| T |
11911353 |
taggatgccgt |
11911363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 11752 - 11542
Alignment:
| Q |
12 |
ggtgttgaagatgatgtttggattggcaagaccctttacaggtaagaatcttaattttacattgaacgtgctgactcagatcattgactgcaaaacaatt |
111 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
11752 |
ggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagaatcttaattttacattgaacgttctgattcagatcattgactgcaaaacaatt |
11653 |
T |
|
| Q |
112 |
tcacctttacctaatagcttagaactaagtaatagagtcttcactaccaaaatgatttagggtttaatactatatgcttctatttttctatttattttga |
211 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11652 |
tcacctttaccttatagcttataactaagtaatagagtcttcactaccaaaaagatttagggtttaatactatatgcttctatttttctatttattttga |
11553 |
T |
|
| Q |
212 |
taggatgccgt |
222 |
Q |
| |
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||||||||||| |
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| T |
11552 |
taggatgccgt |
11542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 37959870 - 37960081
Alignment:
| Q |
11 |
tggtgttgaagatgatgtttggattggcaagaccctttacaggtaagaatcttaattttacattgaacgtgctgactcagatcattgactgcaaaacaat |
110 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || || |||||||||||| ||||| |||||| |
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| T |
37959870 |
tggtggtgaaaatgatgtttggattggcaagaccctttataggtaagaatcttaattttacattgaatctgatggctcagatcattgtctgcagaacaat |
37959969 |
T |
|
| Q |
111 |
ttcacctttacctaatagcttagaactaagtaatagagtcttcactaccaaaatgatttagggtttaatactatatgcttctatttttctatttattttg |
210 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||||||||| ||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37959970 |
ttcacctttacctaatatcttagaactaagtactagagtctttactgtcaaaaagatgtagagtttaatactatatgcttctatttttctatttattttg |
37960069 |
T |
|
| Q |
211 |
ataggatgccgt |
222 |
Q |
| |
|
|||||||||||| |
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|
| T |
37960070 |
ataggatgccgt |
37960081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 31151711 - 31151511
Alignment:
| Q |
22 |
atgatgtttggattggcaagaccctttacaggtaagaatcttaattttacattgaacgtgctgactcagatcattgactgcaaaacaatttcacctttac |
121 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| | || |||||||||||||| |
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| T |
31151711 |
atgatgtttggattggtaagaccctttacaggtaagaatcttaattttacattgaatgtgatggctcagatcattgactgtagaaaaatttcacctttac |
31151612 |
T |
|
| Q |
122 |
ctaatagcttagaactaagtaatagagtcttcactaccaaaatgatttagggtttaatactatatgcttctatttttctatttattttgataggatgccg |
221 |
Q |
| |
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|||||| |||||||||| ||| ||||||||| |||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31151611 |
ctaatatcttagaactatgtactagagtctttactatcaaaaagatttagagtttaatacaatatgcttctatttttctatttattttgataggatgccg |
31151512 |
T |
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| Q |
222 |
t |
222 |
Q |
| |
|
| |
|
|
| T |
31151511 |
t |
31151511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 12634743 - 12634677
Alignment:
| Q |
11 |
tggtgttgaagatgatgtttggattggcaagaccctttacaggtaagaatcttaattttacattgaa |
77 |
Q |
| |
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||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12634743 |
tggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagagtcttaattttacattgaa |
12634677 |
T |
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