View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9745_low_12 (Length: 229)
Name: NF9745_low_12
Description: NF9745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9745_low_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 25493161 - 25492942
Alignment:
| Q |
6 |
aggaagtgcatgccctgaaataaaataaaataaaagaattttagatccatatgaaaatgcagatgagc--aagttagcaaatatgcaatgcaattttcaa |
103 |
Q |
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| T |
25493161 |
aggaagtgcatctcctgaaataaaa-aaaataaaa-----ttagatgcatatgaaaatgcagatgagcgcaagttagcaaatatgcaatgcaattttcaa |
25493068 |
T |
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| Q |
104 |
ttcataatactacaacatttaggacctttagtaacaataatatttttcaaatgttactaaatctcatttttgttgtattgtaagtacagggagagaccaa |
203 |
Q |
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| T |
25493067 |
ttcataatgctacaacatttaggacctttagtaacaataatatttttcaaatgttactaaatctcatttttattgtagtgtaagtacatggagaggccaa |
25492968 |
T |
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| Q |
204 |
attgaaacaattaattatacaagaaa |
229 |
Q |
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| T |
25492967 |
actgaaacaattaattatacaagaaa |
25492942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 25501366 - 25501321
Alignment:
| Q |
184 |
taagtacagggagagaccaaattgaaacaattaattatacaagaaa |
229 |
Q |
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| T |
25501366 |
taagtacagggagaggccaaattgaaacagttaattatacaagaaa |
25501321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 26173823 - 26173784
Alignment:
| Q |
141 |
taatatttttcaaatgttactaaatctcatttttgttgta |
180 |
Q |
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| T |
26173823 |
taatattttttaagtgttactaaatctcatttttgttgta |
26173784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 9438791 - 9438823
Alignment:
| Q |
145 |
atttttcaaatgttactaaatctcatttttgtt |
177 |
Q |
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| T |
9438791 |
atttttcaagtgttactaaatctcatttttgtt |
9438823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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