View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9745_low_2 (Length: 439)
Name: NF9745_low_2
Description: NF9745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9745_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 30002894 - 30003271
Alignment:
| Q |
1 |
aaattgctaaagaaaaatgctgaccattcaaagaaggcagtgacatgtgggatacatatatatgattgattagttgcttcctctcattataatattgatt |
100 |
Q |
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| T |
30002894 |
aaattgctaaagaaaaatgctgaccattcaaagaaggcagtgacatgtgggatgcatatatatgattgattagttgcttcctctcaatataatattgatt |
30002993 |
T |
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| Q |
101 |
gtttccctatagggagttggttcaatgctctaaaatccaatgaaaattataaaaccatttgtttggtaaaaggaagatgagtggaaagcactcaatatta |
200 |
Q |
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| T |
30002994 |
gtttccctatagggagttggttcaatgctctaaaatccaatgaaaattataaaaccatttgtttggtaaaaggaagatgagtggaaagcactcaatattg |
30003093 |
T |
|
| Q |
201 |
gttggagaactctttttatttacaatttattttaatgcctacatataaaccaaagataatagtgccaaaatttttgtta-atcaaaacgaagattattat |
299 |
Q |
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| T |
30003094 |
gttggagaactctctttatttacaatttattttaatgcctacatataaaccaaagataatagtgccaaaatttctgttacatcaaaacgaagattattat |
30003193 |
T |
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| Q |
300 |
atttttggtacaagttagattaggattttgatggttcaaacttatgatcaatgaaaatcattttggcaatatacgact |
377 |
Q |
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||||||||||||||||| |||||||||||||||||||| | || |||||||||| || ||||||||||||||||||| |
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| T |
30003194 |
atttttggtacaagttacattaggattttgatggttcagaattgtgatcaatgagaactattttggcaatatacgact |
30003271 |
T |
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