View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9745_low_4 (Length: 278)

Name: NF9745_low_4
Description: NF9745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9745_low_4
NF9745_low_4
[»] chr3 (3 HSPs)
chr3 (1-263)||(34759640-34759901)
chr3 (224-261)||(28842972-28843010)
chr3 (223-263)||(48528494-48528535)
[»] chr4 (2 HSPs)
chr4 (31-121)||(43729002-43729092)
chr4 (224-260)||(54414866-54414903)
[»] chr2 (2 HSPs)
chr2 (223-263)||(32694129-32694169)
chr2 (223-261)||(11307228-11307266)
[»] chr5 (4 HSPs)
chr5 (224-263)||(26516215-26516255)
chr5 (31-115)||(14496575-14496659)
chr5 (224-263)||(20982248-20982288)
chr5 (224-263)||(40534111-40534151)
[»] chr7 (1 HSPs)
chr7 (223-263)||(48496620-48496660)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 34759901 - 34759640
Alignment:
Q  1 aaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggttattgctggctcctttggtaatgatctgaataccctagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34759901 aaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggttattgctggctcctttggtaatgatctcaataccctagaa 34759802  T
Q  101 gctggttggcaggcatgtccatatactttttcccctccctaaattatcattagtatgcaaatattccacttcatgtttcatttgataatccattgttcat 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34759801 gctggttggcaggcatgtccatatacttttccccctccctaaattatcattagtatgcaaatattccacttcatgtttcatttga-aatccattgttcat 34759703  T
Q  201 tagataaacaacttaattaaacttaagcgcttatcatataagtcttatgtataagctatttct 263  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34759702 ttgataaacaacttaattaaacttaagcgcttatcatataagtcttatgtataagctatttct 34759640  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 28843010 - 28842972
Alignment:
Q  224 taagcgcttatcatataagt-cttatgtataagctattt 261  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  28843010 taagcgcttatcatataagtgcttatgtataagctattt 28842972  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 48528494 - 48528535
Alignment:
Q  223 ttaagcgcttatcatataagt-cttatgtataagctatttct 263  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  48528494 ttaagagcttatcatataagtacttatgtataagctatttct 48528535  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 43729092 - 43729002
Alignment:
Q  31 atatgaatttagcttgtcacagatatgggttattgctggctcctttggtaatgatctgaataccctagaagctggttggcaggcatgtcca 121  Q
    ||||||||| ||||| ||||| ||||||||||||||||| || |||||||||||||| |||||  |||||||||| |||||||||||||||    
T  43729092 atatgaattcagcttatcacaaatatgggttattgctggatcatttggtaatgatcttaatacattagaagctggatggcaggcatgtcca 43729002  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 54414866 - 54414903
Alignment:
Q  224 taagcgcttatcatataagt-cttatgtataagctatt 260  Q
    |||||||||||||||||||| |||||||||||||||||    
T  54414866 taagcgcttatcatataagtgcttatgtataagctatt 54414903  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 32694129 - 32694169
Alignment:
Q  223 ttaagcgcttatcatataagtcttatgtataagctatttct 263  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  32694129 ttaagcgcttatcatataagtattatgtataagctatttct 32694169  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 11307228 - 11307266
Alignment:
Q  223 ttaagcgcttatcatataagtcttatgtataagctattt 261  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  11307228 ttaagcgcttatcataaaagtgttatgtataagctattt 11307266  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 26516215 - 26516255
Alignment:
Q  224 taagcgcttatcatataagt-cttatgtataagctatttct 263  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  26516215 taagcgcttatcatataagtgcttatgtataagctatttct 26516255  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 14496659 - 14496575
Alignment:
Q  31 atatgaatttagcttgtcacagatatgggttattgctggctcctttggtaatgatctgaataccctagaagctggttggcaggca 115  Q
    ||||||||| |||||||| || || ||||| ||| |||| || |||||  ||||||| || ||| | ||||||||||||||||||    
T  14496659 atatgaattcagcttgtcccaaatgtgggtcatttctggttcatttggagatgatcttaacaccattgaagctggttggcaggca 14496575  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 20982288 - 20982248
Alignment:
Q  224 taagcgcttatcatataagt-cttatgtataagctatttct 263  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  20982288 taagtgcttatcatataagtgcttatgtataagctatttct 20982248  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 40534111 - 40534151
Alignment:
Q  224 taagcgcttatcatataagt-cttatgtataagctatttct 263  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  40534111 taagcgcttatcatataaggacttatgtataagctatttct 40534151  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 48496620 - 48496660
Alignment:
Q  223 ttaagcgcttatcatataagtcttatgtataagctatttct 263  Q
    |||||| |||||||||||||| |||||||||| ||||||||    
T  48496620 ttaagcacttatcatataagttttatgtataaactatttct 48496660  T

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