View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9745_low_6 (Length: 259)
Name: NF9745_low_6
Description: NF9745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9745_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 30001937 - 30001704
Alignment:
| Q |
10 |
tatataaaaaggatttaagcagagagggttcaagtacttctccaaagaacactgcatcctttttcttctagacacattaaatagtggnnnnnnnatagtg |
109 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || ||| |
|
|
| T |
30001937 |
tatataaaaaggatttaa--agagagggttcgagtacctctccaaagaacactgcatcctttttattctagacacattaaatagtggttttattatggtg |
30001840 |
T |
|
| Q |
110 |
tctcaaacccacatatttaagtgacatcatgaatatacaatagtcaatttgggggttaaaaggatggtagaccttgccggagattttctctcaacattac |
209 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30001839 |
tctcaaacccacatatttaaatgacatcatgaatatgcaatagtcaatttgggggttaaaaggatggtagaccttgccggagattttctttcaacattac |
30001740 |
T |
|
| Q |
210 |
ctcatgttccacatttacaagccaccttgtttttgt |
245 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30001739 |
ctcatgatccacatttacaagccaccttgtttttgt |
30001704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University