View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9745_low_7 (Length: 259)
Name: NF9745_low_7
Description: NF9745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9745_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 55 - 246
Target Start/End: Complemental strand, 4741899 - 4741707
Alignment:
| Q |
55 |
ttccaaaccgaatgaaacggcaaatcaatttactaaacacagcatattaacaaacaaaacaagtcttttgatgatgtgacaagtttcccaataatttgtt |
154 |
Q |
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| T |
4741899 |
ttccaaaccgaatgaaacggcaaatcaatttactaaacacagcatattaacaaacaaaagaagtcttttaatgatgtgacaagtttcccactgatttgtt |
4741800 |
T |
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| Q |
155 |
agtttaattgggtattaagttacct---agaaatagttttgatgatcacaaatgaacagtttctaactttctacttcaacatgttcttgaggtct |
246 |
Q |
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| T |
4741799 |
ggtttaattgggaat--aattaccttaaaaatatagttttgatgatgacaaatgaacagtttctaactttctacttcaacaagtttttgaggtct |
4741707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 4742854 - 4742782
Alignment:
| Q |
176 |
acctagaaatagttttgatgat--cacaaatgaacagtttctaactttctacttcaacatgttcttgaggtct |
246 |
Q |
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| T |
4742854 |
acctggaaatagttttgatgatgacacaactgaataatttctaactttatacttcaacatgttcttgaggtct |
4742782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 4721071 - 4721031
Alignment:
| Q |
55 |
ttccaaaccgaatgaaacggcaaatcaatttactaaacaca |
95 |
Q |
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| T |
4721071 |
ttccaaaccgaatgaaacggcaaatcaatttactaaacaca |
4721031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 4722450 - 4722380
Alignment:
| Q |
133 |
acaagtttcccaataatttgttagtttaattgggtattaagttacctagaaatagttttgatgatcacaaat |
204 |
Q |
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| T |
4722450 |
acaagtttcccactaatttgttggtttaattgagtagt-agttacctggaaatagttttaatgatgacaaat |
4722380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 58
Target Start/End: Complemental strand, 4721112 - 4721082
Alignment:
| Q |
28 |
agtgaaagtgatgtaaacatttgaattttcc |
58 |
Q |
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| T |
4721112 |
agtgaaagtgatgtaaacatttgaattttcc |
4721082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 58
Target Start/End: Complemental strand, 4741940 - 4741910
Alignment:
| Q |
28 |
agtgaaagtgatgtaaacatttgaattttcc |
58 |
Q |
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| T |
4741940 |
agtgaaagtgatgtaaacatttgaattttcc |
4741910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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