View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9745_low_8 (Length: 246)
Name: NF9745_low_8
Description: NF9745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9745_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 7260273 - 7260508
Alignment:
| Q |
1 |
aacttcttgttgtgacacaaggtcacatcactgctggatttgtttcatcagctaacactgtttatatcaagacattgaagaaaggtgagcttatggtttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7260273 |
aacttcttgttgtgacacaaggtcacatcactgctggatttgtttcatcagctaacactgtttatatcaagacattgaagaaaggtgagcttatggtttt |
7260372 |
T |
|
| Q |
101 |
tccacaaggtttgttgcattttcaagccactgctggtaagagaaatgctgttgcttttgctgtttttagtagtgctagtcctggacttcagattcttgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7260373 |
tccacaaggtttgttgcattttcaagctactgctggtaagagaaatgctgttgcttttgctgtttttagtagtgctagtcctggacttcagattcttgat |
7260472 |
T |
|
| Q |
201 |
tttgcactttttgcaagtaacttctctactcctttg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
7260473 |
tttgcactttttgcaagtaacttctctactcctttg |
7260508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 7271025 - 7271066
Alignment:
| Q |
84 |
ggtgagcttatggtttttccacaaggtttgttgcattttcaa |
125 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
7271025 |
ggtgatcttatggtttttccacaagggatgttgcattttcaa |
7271066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 7287283 - 7287383
Alignment:
| Q |
84 |
ggtgagcttatggtttttccacaaggtttgttgcattttcaagccactgctggtaagagaaatgctgttgcttttgctgtttttagtagtgctagtcctg |
183 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||||||| | | |||||||| |||| ||| ||||||| | |||||||||||| | ||||| |
|
|
| T |
7287283 |
ggtgatcttatggtttttccccaagggatgttgcattttcaagttaattctggtaagggaaaagctactgcttttcttacttttagtagtgcaaatcctg |
7287382 |
T |
|
| Q |
184 |
g |
184 |
Q |
| |
|
| |
|
|
| T |
7287383 |
g |
7287383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 18245901 - 18245990
Alignment:
| Q |
32 |
tgctggatttgtttcatcagctaacactgtttatatcaagacattgaagaaaggtgagcttatggtttttccacaaggtttgttgcattt |
121 |
Q |
| |
|
|||||| |||||||| || || ||||||||||| || || ||| | | |||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
18245901 |
tgctggttttgtttcctctgccaacactgtttacattaaaacactttacaaaggtgatgttatggtttttccacaaggattgttgcattt |
18245990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University