View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9746_high_1 (Length: 511)
Name: NF9746_high_1
Description: NF9746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9746_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 43063000 - 43063354
Alignment:
| Q |
1 |
catgtttgagaatcttataataaggatgactgacttatcctatagtgccaaagttcaaaagaattggaattacaagtattatacacattgcaaaaagaag |
100 |
Q |
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| T |
43063000 |
catgtttgagaatcttataataaggatgactgacttatcctatagtgccaaagttcaaaagaattggaattacaagtattatacacattgcaaaaagaag |
43063099 |
T |
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| Q |
101 |
cattcgttgatgtgagatcctcgatatagtcatggattagttctgcacgcccaatcgtcctcatagatgtgatatcctgaacacaacagtttnnnnnnng |
200 |
Q |
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| T |
43063100 |
cattcgttgatgtgagatcctcgatatagtcatggattagttctgcacgcccaatcgtcctcatagatgtgatatcctgaacacaacagtttaaaaaaa- |
43063198 |
T |
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| Q |
201 |
aaagataatttgataagaatcaatattcaacaatttggtaaaccacatggaaaccatcctaagaggaccacagccttttccataagaaacaccagaagat |
300 |
Q |
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| T |
43063199 |
aaagataatttgataagaatcaatattcaacaatttggtaaaccacatggaaaccatcctaagaggaccacaaccttttccataagaaacaccagaagat |
43063298 |
T |
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| Q |
301 |
cctctaacattattgcagtgatcatatcctgatcagccaccttgtgcagggaacct |
356 |
Q |
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| T |
43063299 |
cctctaacattattgcagtgatcatatcctgatcagccaccttgtgcagggaacct |
43063354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 355 - 496
Target Start/End: Original strand, 43063381 - 43063522
Alignment:
| Q |
355 |
ctttggcatcaacataagcaatgccactaagttgaccttcttgttgtaaaactaaggaataaaccttgtcaattggaggcagctttattaagaagaattt |
454 |
Q |
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| T |
43063381 |
ctttggcatcaacataagcaatgcaactaagttgaccttcttgttgtaaaactaaggaataaaccttgtcaattggaggcagctttattaagaagaattt |
43063480 |
T |
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| Q |
455 |
ttcatttaaattgttcaagaagcttacaaaacattctgaatt |
496 |
Q |
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| T |
43063481 |
ttcatttaaattgttcaagaagcttacaaaacattcagaatt |
43063522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 43184164 - 43184082
Alignment:
| Q |
1 |
catgtttgagaatcttataataaggatgactgacttatcctatagtgccaaagttcaaaagaattggaattacaagtattatacacattg |
90 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43184164 |
catgtttgagaatcttataataaggatgaccta-------tatagtgccaaagttcaaaagaattggaattacaagtattagacacattg |
43184082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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