View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9746_high_12 (Length: 284)
Name: NF9746_high_12
Description: NF9746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9746_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 6184934 - 6185208
Alignment:
| Q |
1 |
tccattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccataattaaattcacccataataattgaactgctgttaatggta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6184934 |
tccattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccataatcaaattcacccataataattgaactgctgttaatggta |
6185033 |
T |
|
| Q |
101 |
cttcgccggctgaaaccgcggctacgaaattgataacaagtgctgccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacaca |
200 |
Q |
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|||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185034 |
cttcaccggctgaaaccgccgcaacgaaattgataacaagggctgccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacaca |
6185133 |
T |
|
| Q |
201 |
tcttccccagtttaaaactgttactatagatgcaaaattgtcatctaatataacaatatctgaactctcctttgc |
275 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6185134 |
tcttccccagtttaacactgttacgatagatgcaaaattgtcatctaatataacaatatctgaactctcttttgc |
6185208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 4235810 - 4236088
Alignment:
| Q |
1 |
tccattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccataattaaattcacccataataattgaactgctgttaatggta |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || | |
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| T |
4235810 |
tccattaaatccttagtaggtttttcagttgcaagagccaatgcacctaatgtatccataatcaaattcacccataataattgaactgctgttaacggaa |
4235909 |
T |
|
| Q |
101 |
cttcgccggctgaaaccgcggctacgaaattgataacaagtgctgccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacaca |
200 |
Q |
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| T |
4235910 |
cttcgcctgctgaaaccgccgcgacaaaatttataacaagtgctgccacattcactgttaattgaaattgaatgaatttttgaatgttgttgtaaacaca |
4236009 |
T |
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| Q |
201 |
tcttccccagtttaaaactgttactatagatgcaaaattgtcatctaatataacaatatctgaactctcctttgctact |
279 |
Q |
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||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4236010 |
tcttccccaatttataactgttacaatagatgcaaaattgtcatctaatataacaatatctgaactctcttttgctact |
4236088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 30441496 - 30441398
Alignment:
| Q |
1 |
tccattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccataattaaattcacccataataattgaactgctgttaatggt |
99 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | |||||||| |
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| T |
30441496 |
tccattagttccttagtaggtttttcagttgcaagagccaaagcatctaatgtatccataatcaaattcacccataataattgaactgatattaatggt |
30441398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 128 - 275
Target Start/End: Original strand, 19592829 - 19592967
Alignment:
| Q |
128 |
aattgataacaagtgctgccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccagtttaaaactgttactat |
227 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
19592829 |
aattgataacaagtgctgccacattcact---------aattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttaaaattgttactat |
19592919 |
T |
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| Q |
228 |
agatgcaaaattgtcatctaatataacaatatctgaactctcctttgc |
275 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
19592920 |
agatgcaaaattgtcatctaatataacaatatctgagctctcttttgc |
19592967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 38356756 - 38356971
Alignment:
| Q |
3 |
cattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccataattaaattcacccataataattgaactgctgttaatggtact |
102 |
Q |
| |
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|||||| ||||| ||||| |||| ||||| || ||||||||||||| |||||||||||| | ||||||||| | | |||||||| |||||| || || |
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| T |
38356756 |
cattaactcctttgtaggcctttctgttgctagtgccaaagcacctagtgtatccataatgagattcacccaaagaagttgaactgttgttaagggaaca |
38356855 |
T |
|
| Q |
103 |
tcgccggctgaaaccgcggctacgaaattgataacaagtgctgccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacacatc |
202 |
Q |
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|| || | ||||| || || | || || || ||||||||||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||||| |
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| T |
38356856 |
tcaccagaagaaactgctgcaataaagtttatcacaagtgctgcaacattcactgttagttgaaactgaataaatttctggatgttgttgtaaacacatc |
38356955 |
T |
|
| Q |
203 |
ttccccagtttaaaac |
218 |
Q |
| |
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||||||| ||||||| |
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| T |
38356956 |
ttccccaccttaaaac |
38356971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 19592786 - 19592824
Alignment:
| Q |
66 |
attcacccataataattgaactgctgttaatggtacttc |
104 |
Q |
| |
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||||||||||||||||||||||| | ||||||||||||| |
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| T |
19592786 |
attcacccataataattgaactgttattaatggtacttc |
19592824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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