View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9746_high_16 (Length: 259)
Name: NF9746_high_16
Description: NF9746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9746_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 54 - 250
Target Start/End: Original strand, 40441826 - 40442022
Alignment:
| Q |
54 |
cagaattgttttcgcaaatcttatctggtggagcttaatacttaagtcacttttgatgaagattggaaatagaggagctttctatctgtgagtatgaggt |
153 |
Q |
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| T |
40441826 |
cagaattgttttcgcaaatcttatctggtggagcttaatacttaagtcacttttgatgaagattggaaatagaggagctttctatctgtgagtatgaggt |
40441925 |
T |
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| Q |
154 |
atatgtaaatcaaatgctaataatgttattgctccttggtcggtcatgcatagtcatctaactggtttatatcctgcattctggtaggtatctctgc |
250 |
Q |
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| T |
40441926 |
atatgtaaatcaaatgctaataatgttattgctccttggtcggtcatgcatagtcatctaactggtttatatcctgcattctggtaggtatctctgc |
40442022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40441775 - 40441809
Alignment:
| Q |
1 |
ctatttatttgatagaaaatatttatggcttccac |
35 |
Q |
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| T |
40441775 |
ctatttatttgatagaaaatatttatggcttccac |
40441809 |
T |
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