View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9746_high_3 (Length: 429)
Name: NF9746_high_3
Description: NF9746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9746_high_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Original strand, 18737928 - 18738329
Alignment:
| Q |
18 |
ataaaaggcattattcacttcacattatcttcatactcagttgtttaatcttgaaacaattcaattttgttatatcttctcttttgcacattctcacaaa |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18737928 |
ataaaaggcattattcacttcacattatcttcatactcagttgtttaatcttgaaacgattcaattttgttatatcttctcttttgcacattctcacaaa |
18738027 |
T |
|
| Q |
118 |
aaatctttcgaccatgaaaaacaacaaagaatcatctcttcacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactacactc |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18738028 |
aaatctttcaaccatgaaaaacaacaaagaatcatctcttcacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactgcactc |
18738127 |
T |
|
| Q |
218 |
tttgcaattctcggtgaatggatgatcttgattctcgcatgttcgatcgcattgttcttcattcctctaactccttctttcacactccattcaacaactt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18738128 |
tttgcaattctcggtgaatggatgatcttgattctcgcatgttcgattgcattgttcttcattcctctaactccttctttcacactccattcaacaactt |
18738227 |
T |
|
| Q |
318 |
caactgttcttaatgtcaccaatggaaaaaccttcacagctaacttgggtgtcgagtttcttgcagaacactccaacactattggaagcacaattcccta |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18738228 |
caactgttcttaatgtcaccaatggaaaaactttcacagctaacttgggtgtcgagtttcttgcagaacactccaacactattggaagcacaattcacta |
18738327 |
T |
|
| Q |
418 |
tg |
419 |
Q |
| |
|
|| |
|
|
| T |
18738328 |
tg |
18738329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Original strand, 18717257 - 18717664
Alignment:
| Q |
18 |
ataaaaggcattattcacttcacattatcttcatactcagttgtttaatcttgaaacaa-----ttcaattttgttatatcttctcttttgcacattctc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |
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|
| T |
18717257 |
ataaaaggcattattcacttcacattatcttcatactcagttgtttaattttgaaacaacttctttcaattctgttatatcttctcttttgcacattctc |
18717356 |
T |
|
| Q |
113 |
acaaaaaatctttcgaccatgaaaaacaacaaagaatcatctcttcacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaacta |
212 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18717357 |
acaaaaaatctttcaaccatgaaaaacaacacagaacaatctctttacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactg |
18717456 |
T |
|
| Q |
213 |
cactctttgcaattctc-ggtgaatggatgatcttgattctcgcatgttcgatcgcattgttcttcattcctctaactccttctttcacactccattcaa |
311 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18717457 |
cactctttgcaattctttggtgaatggatgatcttgattctcgcatgttcgatcgcattgttcttcattcctctaactccttctttcacactccattcaa |
18717556 |
T |
|
| Q |
312 |
caacttcaactgttcttaatgtcaccaatggaaaaaccttcacagctaacttgggtgtcgagtttcttgcagaacactccaacactattggaagcacaat |
411 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
18717557 |
caacttcaactgttcttaatgtcaccgatggaaaaaccttcacagccaacttaggtgtcgagtttcttgcggaacactccaacactattggaagcacaat |
18717656 |
T |
|
| Q |
412 |
tccctatg |
419 |
Q |
| |
|
|| ||||| |
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|
| T |
18717657 |
tcactatg |
18717664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 419
Target Start/End: Original strand, 18648793 - 18649199
Alignment:
| Q |
18 |
ataaaaggcattattcacttcacattatcttcatactcagttgtttaatcttgaaacaa-----ttcaattttgttatatcttctcttttgcacattctc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |
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|
| T |
18648793 |
ataaaaggcattattcacttcacattatattcatactgagttgtttaatcttgaaacaacttctttcaattctgttatatcttctctttctcacattctc |
18648892 |
T |
|
| Q |
113 |
acaaaaaatctttcgaccatgaaaaacaacaaagaatcatctcttcacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaacta |
212 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18648893 |
acaaaaaatctttcaatcatgaagaacaacaaagaacaatctctttacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaacta |
18648992 |
T |
|
| Q |
213 |
cactctttgcaattctcggtgaatggatgatcttgattctcgcatgttcgatcgcattgttcttcattcctctaactccttctttcacactccattcaac |
312 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
18648993 |
cactctttgcaattcttggtgaatggatgatcttgattctcacatgttcaatcgcattgttcttcgttcctctaactccttctttcacactccattcaac |
18649092 |
T |
|
| Q |
313 |
aacttcaactgttcttaatgtcaccaatggaaaaaccttcacagctaacttgggtgtcgagtttcttgcagaacactccaacactattggaagcacaatt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18649093 |
aacttcaactgttcttaatgtcaccaatggaaaaaccttcaaagccaacttaggtgtcgagtttcttgcggaacactccaacactattggaagcacaatt |
18649192 |
T |
|
| Q |
413 |
ccctatg |
419 |
Q |
| |
|
| ||||| |
|
|
| T |
18649193 |
cactatg |
18649199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 36 - 419
Target Start/End: Original strand, 18684543 - 18684931
Alignment:
| Q |
36 |
ttcacattatcttcatactcagttgtttaatcttgaaacaa-----ttcaattttgttatatcttctcttttgcacattctcacaaaaaatctttcgacc |
130 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||||| ||| |
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|
| T |
18684543 |
ttcacattatattcatactcagttgtttaatcttgaaacaacttctttcaattctgttatatcttcactttctcacattctcaccaaaaatctttcaacc |
18684642 |
T |
|
| Q |
131 |
atgaaaaacaacaaagaatcatctcttcacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactacactctttgcaattctcg |
230 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
18684643 |
atgaaaaacaataaagaacaatctctttacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactacactcttcgcaattcttg |
18684742 |
T |
|
| Q |
231 |
gtgaatggatgatcttgattctcgcatgttcgatcgcattgttcttcattcctctaactccttctttcacactccattcaacaacttcaactgttcttaa |
330 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18684743 |
gtgaatggatgatcttgattctcacatgttcgatcgccttgttcttcatccccctaactccttctttcacactccattcaacaacttcaactgttcttaa |
18684842 |
T |
|
| Q |
331 |
tgtcaccaatggaaaaaccttcacagctaacttgggtgtcgagtttcttgcagaacactccaacactattggaagcacaattccctatg |
419 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
18684843 |
tgttaccaatggaaaaaccttcacagccaacttgggtgtcgagtttcttgcggaatactccaacactattggaagcacaattcactatg |
18684931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 106 - 419
Target Start/End: Original strand, 18671344 - 18671657
Alignment:
| Q |
106 |
cattctcacaaaaaatctttcgaccatgaaaaacaacaaagaatcatctcttcacaccattgatcttgatgattcatctttgaatcaagcttatgcaaca |
205 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18671344 |
cattctcacaaaaaatctttcaaccatgaaaaacaacaaagaaaaatctctttacaccattgatcttgatgattcatctttgaatcaagcttatgcaaca |
18671443 |
T |
|
| Q |
206 |
gcaactacactctttgcaattctcggtgaatggatgatcttgattctcgcatgttcgatcgcattgttcttcattcctctaactccttctttcacactcc |
305 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18671444 |
gcaactgcactctttgcaattcttggtgaatggatgatcttgattcttgcatgttcgatcgcattgttcttcattcctctaactccttctttcacactcc |
18671543 |
T |
|
| Q |
306 |
attcaacaacttcaactgttcttaatgtcaccaatggaaaaaccttcacagctaacttgggtgtcgagtttcttgcagaacactccaacactattggaag |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18671544 |
attcaacaacttcaactgttcttaatgtcaccaatggaaaaaccttcacagccaacttgggtgttgagtttcttgcagaacactccaacactattggaag |
18671643 |
T |
|
| Q |
406 |
cacaattccctatg |
419 |
Q |
| |
|
|||| ||| ||||| |
|
|
| T |
18671644 |
cacagttcactatg |
18671657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 18671291 - 18671340
Alignment:
| Q |
27 |
attattcacttcacattatcttcatactcagttgtttaatcttgaaacaa |
76 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
18671291 |
attattcacttcacattatcttcatactgagttgtttaatctagaaacaa |
18671340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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