View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9746_high_5 (Length: 401)
Name: NF9746_high_5
Description: NF9746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9746_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 8437628 - 8437272
Alignment:
| Q |
18 |
atatagttaaggatttgtctcactgatttcatttttcgaaagatatatccttatcttttttgtttactggcaatatatttccttgagaacaaaactaaac |
117 |
Q |
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| T |
8437628 |
atatagttaaggatttgtctcactgatttcatttttcgaaagatatatccttatcttttttgtttactggcaatatatttccttgagaacaaaactaaac |
8437529 |
T |
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| Q |
118 |
tgttacacgtttcagcatacgccctctgccctccacacacttcactaagttataactaatgtaaaaagttannnnnnngcttattatagtgtgtacatgt |
217 |
Q |
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| T |
8437528 |
tgttacacgtttcagcatacgccctctgccctccacacacttca-----------ctaatgtaaaaagtta-ttttttgcttattatagtgtgtacatgt |
8437441 |
T |
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| Q |
218 |
ttatattttcattttgacaagatcaaacttaactagaattgtatcaatgcaaataattaagaggaaattaaaataagctagtgaataatccaagagctga |
317 |
Q |
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| T |
8437440 |
ttatattttcattttgacaagatcaaacttaactagaattgtatcaatgcaaa----taagaggaaattaaaagaagctagtgactaatccaagagctga |
8437345 |
T |
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| Q |
318 |
ccatgaaaaaccatatttgtttaata----ttacttgtcgtcataatcttatggtatggcatttgacaaacctc |
387 |
Q |
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|||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
8437344 |
ccatgaaaaaccatatttgtttaatattacttacttttcgt-ataatcttatggtatggcatttgacaaacctc |
8437272 |
T |
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