View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9746_low_10 (Length: 360)
Name: NF9746_low_10
Description: NF9746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9746_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 27988821 - 27988685
Alignment:
| Q |
35 |
acacatatgaatcttagaatcaatttcatgagaatgaacctatnnnnnnnggaggaattattagaaacattagaaaccaatatcaaatacagaaagctcg |
134 |
Q |
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| T |
27988821 |
acacataagaatcttagaatcaatttcatgagaatgaacctataaaaaaaggagaaattattagaaacattagaaaccaatatcaaatacagaaagctcg |
27988722 |
T |
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| Q |
135 |
tactgaaattcacaaaatgcatcaattatgaaaaccg |
171 |
Q |
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| T |
27988721 |
tactgaaattcacaaaatgcatcaattatgaaaaccg |
27988685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 28075354 - 28075218
Alignment:
| Q |
35 |
acacatatgaatcttagaatcaatttcatgagaatgaacctatnnnnnnnggaggaattattagaaacattagaaaccaatatcaaatacagaaagctcg |
134 |
Q |
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| T |
28075354 |
acacataagaatcttagaatcaatttcatgagaatgaacctataaaaaaaggagaaattattagaaacattagaaaccaatatcaaatacagaaagctcg |
28075255 |
T |
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| Q |
135 |
tactgaaattcacaaaatgcatcaattatgaaaaccg |
171 |
Q |
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| T |
28075254 |
tactgaaattcacaaaatgcatcaattatgaaaaccg |
28075218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 17765495 - 17765552
Alignment:
| Q |
253 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
310 |
Q |
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| T |
17765495 |
acttttatgtatgggcatcggttgaaaattttgtattcttgtcaggaccttgttcttt |
17765552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 26771519 - 26771576
Alignment:
| Q |
253 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
310 |
Q |
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| T |
26771519 |
acttttatgtatgagcatcgactgaaaactttgtgttcttgacaggaccttgttcttt |
26771576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 32536502 - 32536445
Alignment:
| Q |
253 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
310 |
Q |
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| T |
32536502 |
acttttatgtatgagcattgactgaaaactttgtattcttgataggaccttgttcttt |
32536445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 15959347 - 15959404
Alignment:
| Q |
253 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
310 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||| |||||||||||| |
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| T |
15959347 |
acttttatgtatgggcatcgactaaaaactttttattcttgactaaaccttgttcttt |
15959404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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