View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9746_low_11 (Length: 349)
Name: NF9746_low_11
Description: NF9746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9746_low_11 |
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| [»] scaffold0728 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 31810533 - 31810857
Alignment:
| Q |
19 |
aaactttcagtggctaattcaaaagaattagtagctgagaagaaagattcaggatatgctattgatacatcattgcctgatataaacaatggtgtttttg |
118 |
Q |
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| T |
31810533 |
aaactttcagtggctaattcaaaagaattagtagctgagaagaaagattcaggatatgctattgatacatcattgcctgatataaacaatggtgtttttg |
31810632 |
T |
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| Q |
119 |
taacagatgaatttagaatgtatagtttcaaagtaaagacttgttcaaggggttacactcatgattggactgagtgtccatttgttcatccaggggagaa |
218 |
Q |
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| T |
31810633 |
taacagatgaatttagaatgtatagtttcaaagtaaagacttgttcaaggggttacactcatgattggactgagtgtccatttgttcatccaggggagaa |
31810732 |
T |
|
| Q |
219 |
tgctaggaggagagatccaaggaagtatccttatagctgtgttccgtgccccgagtttcgcaaaggaacatgccagaagaaagattcatgtgagtattca |
318 |
Q |
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| T |
31810733 |
tgctaggaggagagatccaaggaagtatccttatagctgtgttccgtgccccgagtttcgcaaaggaacatgccagaagaaagattcatgtgagtattca |
31810832 |
T |
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| Q |
319 |
catggtgtttttgagtctctgcttc |
343 |
Q |
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|||||| ||||||||||| |||||| |
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| T |
31810833 |
catggtatttttgagtctttgcttc |
31810857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 25812616 - 25812709
Alignment:
| Q |
121 |
acagatgaatttagaatgtatagtttcaaagtaaagacttgttcaaggggttacactcatgattggactgagtgtccatttgttcatccagggga |
215 |
Q |
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| T |
25812616 |
acagatgaatttaggatgtttacattcaaagtgaagccttgttcaaggg-ttattctcatgattggactgagtgcccctttgttcatccagggga |
25812709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 9314826 - 9314769
Alignment:
| Q |
176 |
ctcatgattggactgagtgtccatttgttcatccaggggagaatgctaggaggagaga |
233 |
Q |
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| T |
9314826 |
ctcatgattggactgagtgtccttttgtgcatcctggagagaatgctcgaaggagaga |
9314769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 77 - 335
Target Start/End: Original strand, 35643597 - 35643855
Alignment:
| Q |
77 |
ctattgatacatcattgcctgatataaacaatggtgtttttgtaacagatgaatttagaatgtatagtttcaaagtaaagacttgttcaaggggttacac |
176 |
Q |
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| T |
35643597 |
ctattgatatatcgttgcccgacataaacaacggtgtatatggatcagatgagtttaggatgtacagtttcaaggtgaagccatgctcgagggcttactc |
35643696 |
T |
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| Q |
177 |
tcatgattggactgagtgtccatttgttcatccaggggagaatgctaggaggagagatccaaggaagtatccttatagctgtgttccgtgccccgagttt |
276 |
Q |
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||| |||||||| |||||||| |||||||||||||| |||||||| ||||||||||| |||||||| || ||||| ||||||||||| ||||| |||||| |
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| T |
35643697 |
tcacgattggacggagtgtccctttgttcatccaggtgagaatgcaaggaggagagacccaaggaaatacccttacagctgtgttccctgcccagagttt |
35643796 |
T |
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| Q |
277 |
cgcaaaggaacatgccagaagaaagattcatgtgagtattcacatggtgtttttgagtc |
335 |
Q |
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| T |
35643797 |
cgcaaagggtcttgccagaaaggggattcttgtgagtatgcacatggtgttttcgagtc |
35643855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 124 - 285
Target Start/End: Original strand, 30122244 - 30122405
Alignment:
| Q |
124 |
gatgaatttagaatgtatagtttcaaagtaaagacttgttcaaggggttacactcatgattggactgagtgtccatttgttcatccaggggagaatgcta |
223 |
Q |
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||||| ||||| ||||||| |||||||| ||| |||||||||||| ||| ||||||||||||| |||||||| ||||||||||||||||| ||||| | |
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| T |
30122244 |
gatgagtttaggatgtatacattcaaagtgaagccttgttcaagggcttattctcatgattggaccgagtgtccttttgttcatccaggggaaaatgcaa |
30122343 |
T |
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| Q |
224 |
ggaggagagatccaaggaagtatccttatagctgtgttccgtgccccgagtttcgcaaagga |
285 |
Q |
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| T |
30122344 |
ggcgacgcgatccaaggaaatatcattatagctgcgtcccttgtcctgagtttcggaaagga |
30122405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 33647813 - 33647913
Alignment:
| Q |
121 |
acagatgaatttagaatgtatagtttcaaagtaaagacttgttcaaggggttacactcatgattggactgagtgtccatttgttcatccaggggagaatg |
220 |
Q |
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| T |
33647813 |
acagatgaatttaggatgtttacattcaaagtgaagccttgttcaagggcttattctcatgattggactgagtgcccctttgttcatcctggggagaatg |
33647912 |
T |
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| Q |
221 |
c |
221 |
Q |
| |
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| T |
33647913 |
c |
33647913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 19409057 - 19409114
Alignment:
| Q |
176 |
ctcatgattggactgagtgtccatttgttcatccaggggagaatgctaggaggagaga |
233 |
Q |
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|||||||||||||||||||||||| ||| ||||| || ||||| ||| |||||||||| |
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| T |
19409057 |
ctcatgattggactgagtgtccatatgtgcatcccggagagaaggctcggaggagaga |
19409114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 36456267 - 36456370
Alignment:
| Q |
178 |
catgattggactgagtgtccatttgttcatccaggggagaatgctaggaggagagatccaaggaagtatccttatagctgtgttccgtgccccgagtttc |
277 |
Q |
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|||||||||||||| || || ||||||||||||||||||||||| |||| || || || || ||||||| ||| |||||||| || || || || |||| |
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| T |
36456267 |
catgattggactgaatgcccttttgttcatccaggggagaatgcccggagaagggacccgagaaagtatcattacagctgtgtcccttgtcctgattttc |
36456366 |
T |
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| Q |
278 |
gcaa |
281 |
Q |
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|||| |
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| T |
36456367 |
gcaa |
36456370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 4623 - 4680
Alignment:
| Q |
176 |
ctcatgattggactgagtgtccatttgttcatccaggggagaatgctaggaggagaga |
233 |
Q |
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|||||||||||||||||||||||| ||| ||||| || ||||| ||| |||||||||| |
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| T |
4623 |
ctcatgattggactgagtgtccatatgtgcatcccggagagaaggctcggaggagaga |
4680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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