View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9746_low_12 (Length: 349)
Name: NF9746_low_12
Description: NF9746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9746_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 3323801 - 3323488
Alignment:
| Q |
18 |
ccacccttgtagagtatatttattattattgtttctaaggattgattaaataattgttgttccttagtttgttgagaagttgagacattctccaacaaga |
117 |
Q |
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| T |
3323801 |
ccacccttgtagagtatatttattattattgtttctaaggattgattaaataattgttgttccttagtttgttgagaagttgagacattctccaacaaga |
3323702 |
T |
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| Q |
118 |
gaaatgaagatagggttattatatgatattgcacaagagttctctatagaatgggatgggaaggctttgaagaaaatgctttatacacactcatcattat |
217 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
3323701 |
gaaatgaagataaggttattatatgatattgcacaagagttctctatagaatgggatggtaaggctttgaagaaaatgctttatacacacccatcattat |
3323602 |
T |
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| Q |
218 |
atgaagtaagtaaattttcacactgtgacttatatccaagcaaatggaacatttgttttatcacaaatatgaattagaatttcataattgtgtgattcac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3323601 |
atgaagtaagtaaattttcacactgtgacttatatccaagcaaatggaacatttgttttatcacaaatatgaattagaatttcataattgtgtgattcac |
3323502 |
T |
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| Q |
318 |
caacttcggtcctt |
331 |
Q |
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|||||| ||||||| |
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| T |
3323501 |
caactttggtcctt |
3323488 |
T |
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