View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9746_low_19 (Length: 264)
Name: NF9746_low_19
Description: NF9746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9746_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 47679431 - 47679672
Alignment:
| Q |
8 |
aagcagagacaacttcagatattgtagatccaatattacaccaaggttttaataagaatgaaaaaatgagatgcatacatgttggattactttgtgttca |
107 |
Q |
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| T |
47679431 |
aagcagggacaacttcagatattgtagatccaatattacaccaaggttttaataagaatgaaaaaatgagatgcatccatgttggattactttgtgttca |
47679530 |
T |
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| Q |
108 |
agaagatatagctgtgagaccaaatatgagttcagttttactaatgcttaatagcaccactttcccactccctgaaccttcggaacctccatttttaatg |
207 |
Q |
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| T |
47679531 |
agaagatatagctatgagaccaaatatgagttcagttttactaatgcttaatagcaccactttcccactccctgaaccttcggaacctccatttttaatg |
47679630 |
T |
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| Q |
208 |
caacccaaaagggcattatctataccattaaatgaacaatat |
249 |
Q |
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| T |
47679631 |
caacccaaaagggcattatctataccattaaatgaacaatat |
47679672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 47691092 - 47691331
Alignment:
| Q |
10 |
gcagagacaacttcagatattgtagatccaatattacaccaaggttttaataagaatgaaaaaatgagatgcatacatgttggattactttgtgttcaag |
109 |
Q |
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| T |
47691092 |
gcagggacaagttcagatatcgttgatcccatattagaacaaggtttaaacaagaatgaaacaatgagatgcatccatgttggattactttgtgttcaag |
47691191 |
T |
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| Q |
110 |
aagatatagctgtgagaccaaatatgagttcagttttactaatgcttaatagcaccactttcccactccctgaaccttcggaacctccatttttaatgca |
209 |
Q |
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| T |
47691192 |
aagatatagatgtgagaccaactatgagttctgttctattaatgcttaatagcaccactttcccactccctgaaccttcggaacctccatttttaatgca |
47691291 |
T |
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| Q |
210 |
acccaaaagggcattatctataccattaaatgaacaatat |
249 |
Q |
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| T |
47691292 |
acccaaaagggcattatctatatcattaagtgagcaatat |
47691331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 47771544 - 47771591
Alignment:
| Q |
64 |
aatgaaaaaatgagatgcatacatgttggattactttgtgttcaagaa |
111 |
Q |
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| T |
47771544 |
aatgaaataatgagatgcatccatattggcttactttgtgttcaagaa |
47771591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 6497250 - 6497214
Alignment:
| Q |
74 |
tgagatgcatacatgttggattactttgtgttcaaga |
110 |
Q |
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| T |
6497250 |
tgagatgtatacatattggattactttgtgttcaaga |
6497214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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