View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9746_low_28 (Length: 240)

Name: NF9746_low_28
Description: NF9746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9746_low_28
NF9746_low_28
[»] chr3 (14 HSPs)
chr3 (19-230)||(9020578-9020788)
chr3 (76-228)||(34706339-34706490)
chr3 (76-205)||(10723696-10723825)
chr3 (76-179)||(7330904-7331007)
chr3 (76-179)||(28850047-28850150)
chr3 (170-221)||(330897-330948)
chr3 (77-181)||(31543487-31543591)
chr3 (170-228)||(2032443-2032501)
chr3 (76-149)||(30675663-30675736)
chr3 (157-228)||(7269672-7269743)
chr3 (170-221)||(25590836-25590887)
chr3 (174-221)||(50406762-50406809)
chr3 (170-228)||(6955997-6956055)
chr3 (170-223)||(48647889-48647942)
[»] chr8 (14 HSPs)
chr8 (76-228)||(40917799-40917951)
chr8 (137-227)||(29738422-29738512)
chr8 (79-205)||(3460704-3460830)
chr8 (76-196)||(16220761-16220881)
chr8 (83-205)||(37810113-37810232)
chr8 (76-205)||(41313047-41313176)
chr8 (170-221)||(2086455-2086506)
chr8 (78-149)||(39566056-39566127)
chr8 (170-228)||(13903774-13903832)
chr8 (112-147)||(40917951-40917986)
chr8 (171-221)||(39029048-39029098)
chr8 (170-223)||(13637800-13637853)
chr8 (170-223)||(13738213-13738266)
chr8 (80-149)||(36265873-36265942)
[»] chr7 (13 HSPs)
chr7 (78-228)||(41816283-41816433)
chr7 (76-224)||(48259062-48259210)
chr7 (76-227)||(45024697-45024848)
chr7 (76-228)||(45225712-45225864)
chr7 (79-221)||(39878563-39878705)
chr7 (77-205)||(23184498-23184630)
chr7 (174-221)||(25102395-25102442)
chr7 (170-221)||(38477646-38477697)
chr7 (80-139)||(41085021-41085080)
chr7 (107-227)||(25750224-25750344)
chr7 (76-139)||(22491726-22491789)
chr7 (174-227)||(36031057-36031110)
chr7 (170-206)||(35594347-35594383)
[»] chr1 (9 HSPs)
chr1 (76-226)||(8248914-8249064)
chr1 (106-195)||(29675349-29675438)
chr1 (145-221)||(25040226-25040302)
chr1 (80-139)||(14592083-14592142)
chr1 (142-227)||(4861557-4861642)
chr1 (170-227)||(23980903-23980960)
chr1 (80-142)||(35950027-35950089)
chr1 (142-206)||(5806637-5806701)
chr1 (171-211)||(30674129-30674169)
[»] chr4 (14 HSPs)
chr4 (79-228)||(55961265-55961414)
chr4 (78-227)||(10310406-10310555)
chr4 (76-205)||(48035378-48035507)
chr4 (76-205)||(54681779-54681908)
chr4 (86-205)||(7138719-7138838)
chr4 (79-182)||(36119547-36119650)
chr4 (76-205)||(29696437-29696566)
chr4 (76-205)||(31518334-31518463)
chr4 (79-138)||(23544135-23544194)
chr4 (82-149)||(48706909-48706976)
chr4 (142-221)||(50501027-50501106)
chr4 (170-223)||(51783582-51783635)
chr4 (173-221)||(39911680-39911728)
chr4 (171-223)||(45043304-45043356)
[»] chr5 (7 HSPs)
chr5 (78-228)||(20654618-20654768)
chr5 (78-181)||(39144425-39144528)
chr5 (104-225)||(26108507-26108628)
chr5 (121-196)||(4921525-4921600)
chr5 (80-138)||(19555227-19555285)
chr5 (141-227)||(22963908-22963994)
chr5 (170-223)||(35100483-35100536)
[»] chr2 (7 HSPs)
chr2 (78-182)||(29078370-29078474)
chr2 (82-227)||(3601727-3601872)
chr2 (76-205)||(6191767-6191896)
chr2 (76-179)||(31642507-31642610)
chr2 (76-149)||(13481455-13481528)
chr2 (170-228)||(6150067-6150125)
chr2 (107-209)||(925753-925855)
[»] chr6 (3 HSPs)
chr6 (76-151)||(6271734-6271809)
chr6 (78-182)||(34516336-34516440)
chr6 (107-197)||(33858917-33859007)
[»] scaffold0294 (1 HSPs)
scaffold0294 (76-149)||(2135-2208)
[»] scaffold0392 (1 HSPs)
scaffold0392 (76-149)||(860-933)
[»] scaffold0069 (1 HSPs)
scaffold0069 (174-223)||(4100-4149)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 9020578 - 9020788
Alignment:
Q  19 atttctaaacgggtgtgcatatatataagggtaaatatctccattagaagnnnnnnntagatctttctttcctccaattttctaatccactttctattaa 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  9020578 atttctaaacgggtgtgcatatatataagggtatatatctccattagaa-aaaaaaatagatctttctttcctccaattttctaatccactttctattaa 9020676  T
Q  119 atcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatctttccttttactatctttcctcttactttctcttctcatccaa 218  Q
    | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9020677 accaaacaaccaaaacaatcccttcattttccatttcctttctatcctcatacaatctttccttttactatctttcctcttactttctcttctcatccaa 9020776  T
Q  219 acatagcctatg 230  Q
    ||||||||||||    
T  9020777 acatagcctatg 9020788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 76 - 228
Target Start/End: Complemental strand, 34706490 - 34706339
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||||||||||| ||||  |||||| |||||||||||||    
T  34706490 tagatctttctttcctccaatgttctaatccattttctattaaaccaaacaactaaaacaatcccttcacttttcattctctttctttcctcatacaatc 34706391  T
Q  176 tttccttttactatctttcctcttactttctcttctcatccaaacatagccta 228  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||| ||||    
T  34706390 tttcctttcactat-tttcctcttactttctcttctcatccaaacataaccta 34706339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 10723696 - 10723825
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    |||||||||||||||| ||| |||||| |||||||||||||| | |||||||| |||| |||||| ||||||||   |  |||||| |||||||||||||    
T  10723696 tagatctttctttccttcaactttctattccactttctattataccaaacaactaaaataatcccctcactttctcctctctttctttcctcatacaatc 10723795  T
Q  176 tttccttttactatctttcctcttactttc 205  Q
    |||| |||| || ||||||||  |||||||    
T  10723796 tttcatttttctttctttccttatactttc 10723825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 7330904 - 7331007
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    |||||| ||||||| || || ||||||||||||||||| ||||| ||||||| |||||||||||  |||||||||| |  | |||| |||||||||||||    
T  7330904 tagatcattctttcttcaaactttctaatccactttctcttaaaccaaacaatcaaaacaatcctctcactttccactctccttctttcctcatacaatc 7331003  T
Q  176 tttc 179  Q
    ||||    
T  7331004 tttc 7331007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 28850047 - 28850150
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    |||||| |||||||||| || |||| |||||||||||| ||||| ||||||||||||||||||   |||||||||| |  | || | |||||||||||||    
T  28850047 tagatcattctttcctcaaactttcgaatccactttctcttaaaccaaacaaccaaaacaatcatctcactttccactctcattttttcctcatacaatc 28850146  T
Q  176 tttc 179  Q
    ||||    
T  28850147 tttc 28850150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 330897 - 330948
Alignment:
Q  170 acaatctttccttttactatctttcctcttactttctcttctcatccaaaca 221  Q
    |||||||||| |||||| |||||||||||||||||||||| |||||||||||    
T  330897 acaatctttcattttacaatctttcctcttactttctcttgtcatccaaaca 330948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 31543487 - 31543591
Alignment:
Q  77 agatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatct 176  Q
    |||||||||||||||   | ||||||| ||||||||| ||| | |||||||||| ||||||||||| | |||| | || |||||| |||| | |||||||    
T  31543487 agatctttctttcctttcactttctaacccactttctcttataccaaacaaccataacaatccctttattttctacttactttctttccttacacaatct 31543586  T
Q  177 ttcct 181  Q
    |||||    
T  31543587 ttcct 31543591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 2032443 - 2032501
Alignment:
Q  170 acaatctttccttttactatctttcctcttactttctcttctcatccaaacatagccta 228  Q
    ||||||||||||||||||||||||||| | ||||||| |  ||||||||||| ||||||    
T  2032443 acaatctttccttttactatctttcctttcactttctttgatcatccaaacagagccta 2032501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 30675736 - 30675663
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttc 149  Q
    |||||||||||||||||||| |||| | |||||||||  ||  | |||||||||||||||||||  ||||||||    
T  30675736 tagatctttctttcctccaactttccattccactttcccttgtaccaaacaaccaaaacaatcctctcactttc 30675663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 7269672 - 7269743
Alignment:
Q  157 tttctatcctcatacaatctttccttttactatctttcctcttactttctcttctcatccaaacatagccta 228  Q
    ||||| |||| |||||||||||||||| |||||||||||| | ||||||  ||  || ||||||||||||||    
T  7269672 tttctttccttatacaatctttcctttcactatctttcctttcactttcctttggcaaccaaacatagccta 7269743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 25590887 - 25590836
Alignment:
Q  170 acaatctttccttttactatctttcctcttactttctcttctcatccaaaca 221  Q
    ||||||||||||||||||||||||||||  ||||||| |||  |||||||||    
T  25590887 acaatctttccttttactatctttcctcacactttcttttccaatccaaaca 25590836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 50406762 - 50406809
Alignment:
Q  174 tctttccttttactatctttcctcttactttctcttctcatccaaaca 221  Q
    ||||||||| |||| |||||||| | ||||||||||||||||||||||    
T  50406762 tctttccttatactttctttcctttcactttctcttctcatccaaaca 50406809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 6955997 - 6956055
Alignment:
Q  170 acaatctttccttttactatctttcctcttactttctcttctcatccaaacatagccta 228  Q
    |||||||||||| |||||||||||||| | ||||||| |  ||||||||||||| ||||    
T  6955997 acaatctttcctcttactatctttcctttcactttctttgatcatccaaacatacccta 6956055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 48647889 - 48647942
Alignment:
Q  170 acaatctttccttttactatctttcctcttactttctcttctcatccaaacata 223  Q
    |||||| ||| ||||||||||||||||  |||||||| ||||| ||||||||||    
T  48647889 acaatcattctttttactatctttccttctactttcttttctcttccaaacata 48647942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 76 - 228
Target Start/End: Complemental strand, 40917951 - 40917799
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  40917951 tagatctttctttcctccaattttccaatccactttctattaaaccaaacaaccaaaacaatcccttcactttccattccctttctttcctcatacaatc 40917852  T
Q  176 tttccttttactatctttcctcttactttctcttctcatccaaacatagccta 228  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40917851 tttcctttcactatctttcctcttactttctcttctcatccaaacatagccta 40917799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 29738512 - 29738422
Alignment:
Q  137 tcccttcactttccatttcctttctatcctcatacaatctttccttttactatctttcctcttactttctcttctcatccaaacatagcct 227  Q
    ||||||||||||||| | ||||||| ||||||||| ||||||||||| |||| |||||||||||||||||| | |||||||||||||||||    
T  29738512 tcccttcactttccactccctttctttcctcataccatctttcctttcactagctttcctcttactttctcatgtcatccaaacatagcct 29738422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 205
Target Start/End: Complemental strand, 3460830 - 3460704
Alignment:
Q  79 atctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatcttt 178  Q
    ||||||||||||||  | ||||||||||||||||| ||| | |||||||||| |||||| |||||| |||| | || |||||| |||| | |||||||||    
T  3460830 atctttctttcctctcactttctaatccactttctcttataccaaacaaccataacaattccttcattttctacttactttctttccttacacaatcttt 3460731  T
Q  179 ccttttactatctttcctcttactttc 205  Q
    ||| |  ||||||||||| | ||||||    
T  3460730 cctatctctatctttcctttaactttc 3460704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 16220761 - 16220881
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    ||||||||||||||||  || |||||| |||||||||| ||| | |||||| |||||||||||| ||||||||| | |   ||||| |||| ||||||||    
T  16220761 tagatctttctttcctttaactttctattccactttctcttataccaaacatccaaaacaatcctttcactttctactctttttctttccttatacaatc 16220860  T
Q  176 tttccttttactatctttcct 196  Q
    ||||||||  || ||||||||    
T  16220861 tttcctttctctttctttcct 16220881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 37810232 - 37810113
Alignment:
Q  83 ttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttcca-tttcctttctatcctcatacaatctttcct 181  Q
    |||||||||| || ||||||||| ||||||| ||||| |||||||||||||||||||  |||||||||| | |||||    ||||||||||||||||| |    
T  37810232 ttctttcctcaaactttctaatcgactttctcttaaaccaaacaaccaaaacaatcctctcactttccactctcctt----tcctcatacaatctttctt 37810137  T
Q  182 tttactatctttcctcttactttc 205  Q
    ||  || |||||||| | ||||||    
T  37810136 ttctctttctttcctttcactttc 37810113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 41313047 - 41313176
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    ||||||||||||||||   | |||||||| |||||||| ||| | |||||||||| ||||||||||||| |||| | || |||||| |||| | | ||||    
T  41313047 tagatctttctttcctttcactttctaattcactttctcttataccaaacaaccataacaatcccttcattttctacttactttctttccttacagaatc 41313146  T
Q  176 tttccttttactatctttcctcttactttc 205  Q
    |||||| |  ||||||||||| | ||||||    
T  41313147 tttcctatctctatctttcctttcactttc 41313176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 2086506 - 2086455
Alignment:
Q  170 acaatctttccttttactatctttcctcttactttctcttctcatccaaaca 221  Q
    ||||||||||||||||||||||||||||  ||||||| |||| |||||||||    
T  2086506 acaatctttccttttactatctttcctcacactttcttttcttatccaaaca 2086455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 39566056 - 39566127
Alignment:
Q  78 gatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttc 149  Q
    |||||||||||||||||| |||||| ||||||||||  |  | |||||||||||||||||||  ||||||||    
T  39566056 gatctttctttcctccaactttctattccactttctcgtgtaccaaacaaccaaaacaatcctctcactttc 39566127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 13903832 - 13903774
Alignment:
Q  170 acaatctttccttttactatctttcctcttactttctcttctcatccaaacatagccta 228  Q
    |||||||||||||||||| ||||||||||| |||||| |  ||||||||||| ||||||    
T  13903832 acaatctttccttttactttctttcctcttcctttctttgatcatccaaacaaagccta 13903774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 147
Target Start/End: Complemental strand, 40917986 - 40917951
Alignment:
Q  112 ctattaaatcaaacaaccaaaacaatcccttcactt 147  Q
    |||||||||||||||||||||||||||| |||||||    
T  40917986 ctattaaatcaaacaaccaaaacaatcctttcactt 40917951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 39029048 - 39029098
Alignment:
Q  171 caatctttccttttactatctttcctcttactttctcttctcatccaaaca 221  Q
    ||||||||||| ||||| ||||||||  |||||||| ||||||||||||||    
T  39029048 caatctttcctcttactttctttccttatactttcttttctcatccaaaca 39029098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 13637800 - 13637853
Alignment:
Q  170 acaatctttccttttactatctttcctcttactttctcttctcatccaaacata 223  Q
    |||||||||||| |||||||||||||| | ||||||| |  |||||||||||||    
T  13637800 acaatctttcctcttactatctttcctttcactttctttgatcatccaaacata 13637853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 13738213 - 13738266
Alignment:
Q  170 acaatctttccttttactatctttcctcttactttctcttctcatccaaacata 223  Q
    |||||||||||| |||||||||||||| | ||||||| |  |||||||||||||    
T  13738213 acaatctttcctcttactatctttcctttcactttctttgatcatccaaacata 13738266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 36265873 - 36265942
Alignment:
Q  80 tctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttc 149  Q
    |||||||||||||||| ||||||  ||||||||| ||  ||||||||||| ||| |||||  ||||||||    
T  36265873 tctttctttcctccaactttctatcccactttctcttgtatcaaacaacccaaataatcctctcactttc 36265942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 41816283 - 41816433
Alignment:
Q  78 gatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatctt 177  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  41816283 gatctttctttcctccaattttccaatccactttctattaaaccaaacaaccaaaacaatcccttcactttccattccctttctttcctcatacaatctt 41816382  T
Q  178 tccttttactatctttcctcttactttctcttctcatccaaacatagccta 228  Q
    || | | ||||||||||||||||||||||||||||||||||||||||||||    
T  41816383 tcatgtcactatctttcctcttactttctcttctcatccaaacatagccta 41816433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 48259210 - 48259062
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    ||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||    
T  48259210 tagatctttctttcctccaatttttcaatccactttctattaaaccaaacaaccaaaacaatcccttcactttccattccctttctttcctcatacagtc 48259111  T
Q  176 tttccttttactatctttcctcttactttctcttctcatccaaacatag 224  Q
    |||||||| || |||||||||||||||||||||||||||||||| ||||    
T  48259110 tttcctttcaccatctttcctcttactttctcttctcatccaaagatag 48259062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 45024697 - 45024848
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||||||||  |||||| |||||||| ||||    
T  45024697 tagatctttctttcctccaattttccaatccaatttctattaaaccaaacaaccaaaacaatcccttcgctttccattctctttctttcctcatataatc 45024796  T
Q  176 tttccttttactatctttcctcttactttctcttctcatccaaacatagcct 227  Q
    |||||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  45024797 tttcctttcaccgtctttcctcttactttctcttctcatccaaacatagcct 45024848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 76 - 228
Target Start/End: Original strand, 45225712 - 45225864
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| | ||||||| ||||||||| |||    
T  45225712 tagatttttctttccttcaattttctaatccactttctattaaaccaaacaaccaaaacaatcacttcactttccactccctttctttcctcataccatc 45225811  T
Q  176 tttccttttactatctttcctcttactttctcttctcatccaaacatagccta 228  Q
    |||||||| |||| |||||||||||||||||| | ||||||||||||||||||    
T  45225812 tttcctttcactagctttcctcttactttctcatgtcatccaaacatagccta 45225864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 39878705 - 39878563
Alignment:
Q  79 atctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatcttt 178  Q
    ||||||||||||| ||| |||||| |||| ||||| ||| | |||||||||||||||||||  ||| |||| |||   ||||| |||||||| |||||||    
T  39878705 atctttctttccttcaactttctattccattttcttttataccaaacaaccaaaacaatcctctcattttctattctttttctttcctcatataatcttt 39878606  T
Q  179 ccttttactatctttcctcttactttctcttctcatccaaaca 221  Q
    ||||   || |||||||| | ||||||| |  |||||||||||    
T  39878605 ccttactctttctttcctttcactttctttgatcatccaaaca 39878563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 205
Target Start/End: Complemental strand, 23184630 - 23184498
Alignment:
Q  77 agatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcc----tcataca 172  Q
    |||||||||||||||  || |||||| |||||| || |||| |||||||||  |||| |||||| |||||||| | |  |||||| |||    |||||||    
T  23184630 agatctttctttcctttaactttctactccactctcgattatatcaaacaattaaaataatcccctcactttctactctctttctttcctcgatcataca 23184531  T
Q  173 atctttccttttactatctttcctcttactttc 205  Q
    |||||||||||| || |||||||| ||||||||    
T  23184530 atctttcctttttctttctttccttttactttc 23184498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 25102395 - 25102442
Alignment:
Q  174 tctttccttttactatctttcctcttactttctcttctcatccaaaca 221  Q
    ||||||||| ||||||||||||| | ||||||||||||||||||||||    
T  25102395 tctttccttatactatctttcctttcactttctcttctcatccaaaca 25102442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 38477697 - 38477646
Alignment:
Q  170 acaatctttccttttactatctttcctcttactttctcttctcatccaaaca 221  Q
    |||||||||||||||| | |||||||||||||||||| || |||||||||||    
T  38477697 acaatctttccttttattttctttcctcttactttcttttatcatccaaaca 38477646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 41085080 - 41085021
Alignment:
Q  80 tctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcc 139  Q
    |||||||||||||||| |||||| |||||||||| ||| | ||||||||||||| |||||    
T  41085080 tctttctttcctccaactttctattccactttctcttataccaaacaaccaaaataatcc 41085021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 25750224 - 25750344
Alignment:
Q  107 actttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatctttccttttactatctttcctcttactttct 206  Q
    ||||||| ||| | ||||||||||||| |||||| |||| ||| | |   ||||| ||||||||||||||||||| |  || |||||||| ||||||||     
T  25750224 actttctcttataccaaacaaccaaaataatcccctcacattctactctttttctttcctcatacaatctttcctatctctttctttccttttactttca 25750323  T
Q  207 cttctcatccaaacatagcct 227  Q
     || ||| ||||||| |||||    
T  25750324 tttttcaaccaaacaaagcct 25750344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 22491726 - 22491789
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcc 139  Q
    ||||||||||||||||  || |||||| |||||||||| ||  | |||||||||||||||||||    
T  22491726 tagatctttctttccttaaactttctactccactttctcttgtaccaaacaaccaaaacaatcc 22491789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 36031057 - 36031110
Alignment:
Q  174 tctttccttttactatctttcctcttactttctcttctcatccaaacatagcct 227  Q
    ||||| || ||||| |||||||| | |||||||||||||||||||||| |||||    
T  36031057 tcttttctcttactttctttcctttcactttctcttctcatccaaacaaagcct 36031110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 35594347 - 35594383
Alignment:
Q  170 acaatctttccttttactatctttcctcttactttct 206  Q
    ||||||||||||||||||||||||||||  |||||||    
T  35594347 acaatctttccttttactatctttcctcacactttct 35594383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 76 - 226
Target Start/End: Complemental strand, 8249064 - 8248914
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    |||||||||||||||||||||||||  ||||||||| ||||||| |||||||||||||||||||||||||||||||||  |||||| |||||||||||||    
T  8249064 tagatctttctttcctccaattttccgatccactttttattaaaccaaacaaccaaaacaatcccttcactttccattctctttctttcctcatacaatc 8248965  T
Q  176 tttccttttactatctttcctcttactttctcttctcatccaaacatagcc 226  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||||||||    
T  8248964 tttcctttcaccgtctttcctcttactttctcttctcatccaaacatagcc 8248914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 29675438 - 29675349
Alignment:
Q  106 cactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatctttccttttactatctttcc 195  Q
    |||||||| ||| | |||||||| ||||||||||| |||||||| | |   ||||| |||||||||||||||||||||  ||||||||||    
T  29675438 cactttctcttataccaaacaactaaaacaatcccatcactttctactctttttctttcctcatacaatctttcctttctctatctttcc 29675349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 25040302 - 25040226
Alignment:
Q  145 ctttccatttcctttctatcctcatacaatctttccttttactatctttcctcttactttctcttctcatccaaaca 221  Q
    |||||| ||| |||||| |||| | ||||||||| || |||||||||||||| | ||||||| ||||||||||||||    
T  25040302 ctttccttttactttctttccttaaacaatcttttctcttactatctttcctttcactttcttttctcatccaaaca 25040226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 14592083 - 14592142
Alignment:
Q  80 tctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcc 139  Q
    |||||||||||||||| |||||| |||||||||| ||  | |||||||||||||||||||    
T  14592083 tctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaacaatcc 14592142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 4861557 - 4861642
Alignment:
Q  142 tcactttccatttcctttctatcc-tcatacaatctttccttttactatctttcctcttactttctcttctcatccaaacatagcct 227  Q
    |||||||| |||  |||||||||| ||| |||||||||||||| |||||||||||| | |||||||  ||||||||||||| |||||    
T  4861557 tcactttctattcactttctatccatca-acaatctttcctttcactatctttcctttcactttcttctctcatccaaacaaagcct 4861642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 23980903 - 23980960
Alignment:
Q  170 acaatctttccttttactatctttcctcttactttctcttctcatccaaacatagcct 227  Q
    |||||||||||||| ||| |||||||| | ||||||| |||||||||||||| |||||    
T  23980903 acaatctttcctttcactttctttcctttaactttcttttctcatccaaacagagcct 23980960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 35950089 - 35950027
Alignment:
Q  80 tctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatccctt 142  Q
    ||||||||| |||||| |||||| ||||| |||| ||  | ||||||||||||||||||||||    
T  35950089 tctttcttttctccaactttctattccacattctcttgtaccaaacaaccaaaacaatccctt 35950027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 5806637 - 5806701
Alignment:
Q  142 tcactttccatttcctttctatcctcatacaatctttccttttactatctttcctcttactttct 206  Q
    ||||||||||||  |||||| ||||   |||||||||||| |||||||||||||| | |||||||    
T  5806637 tcactttccattcactttctttcctttaacaatctttcctcttactatctttcctttcactttct 5806701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 30674169 - 30674129
Alignment:
Q  171 caatctttccttttactatctttcctcttactttctcttct 211  Q
    |||||||||||||||| |||||||||||||| |||| ||||    
T  30674169 caatctttccttttacgatctttcctcttacattcttttct 30674129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 55961265 - 55961414
Alignment:
Q  79 atctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatcttt 178  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||  ||||||||||||| ||||||| ||||||||| ||||||    
T  55961265 atctttctttcctccaattttctaatccactttctattaaaccaaataaccaaaacaatcatttcactttccattccctttctttcctcataccatcttt 55961364  T
Q  179 ccttttactatctttcctcttactttctcttctcatccaaacatagccta 228  Q
    ||||| |||||||||||| |||| ||||||||| ||||||||||||||||    
T  55961365 cctttcactatctttccttttacattctcttcttatccaaacatagccta 55961414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 227
Target Start/End: Original strand, 10310406 - 10310555
Alignment:
Q  78 gatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatctt 177  Q
    |||||||||||||| ||| |||||| |||||||||| ||| | |||||||||||||||||||| |||||||| ||||  ||||| |||||||  ||||||    
T  10310406 gatctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatcccctcactttctattttttttctttcctcatttaatctt 10310505  T
Q  178 tccttttactatctttcctcttactttctcttctcatccaaacatagcct 227  Q
    |||||  ||| |||||||| ||||||||| |  ||||||||||| |||||    
T  10310506 tccttacactttctttccttttactttctttgatcatccaaacaaagcct 10310555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 48035507 - 48035378
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    |||||||||||||||||||| |||| |||||||||||| ||| |  |||||||||||| |||||| |||||||| | | | ||||| |||||||||||||    
T  48035507 tagatctttctttcctccaactttccaatccactttctcttatacgaaacaaccaaaataatcccctcactttctactccttttctttcctcatacaatc 48035408  T
Q  176 tttccttttactatctttcctcttactttc 205  Q
    ||||| ||  || |||||||| | ||||||    
T  48035407 tttccattctctttctttcctttcactttc 48035378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 54681908 - 54681779
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    ||||| |||| ||||| |||||||||| |||||||||||||| | |||||||| ||||||||||| ||||||||   |  |||||| |||||||||||||    
T  54681908 tagatttttccttccttcaattttctattccactttctattataccaaacaactaaaacaatcccctcactttctcctctctttctttcctcatacaatc 54681809  T
Q  176 tttccttttactatctttcctcttactttc 205  Q
    |||| |||| || ||||||||  |||||||    
T  54681808 tttcttttttctttctttccttatactttc 54681779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 7138838 - 7138719
Alignment:
Q  86 tttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatctttcctttta 185  Q
    ||||||| || | ||||||||||||||| ||||| ||||||| |||||||||||  |||||||||| |  | |||| ||||||||||||||||| |||      
T  7138838 tttcctcaaactgtctaatccactttctcttaaaccaaacaatcaaaacaatcctctcactttccactctcattctttcctcatacaatctttcttttct 7138739  T
Q  186 ctatctttcctcttactttc 205  Q
    || |||||||| | ||||||    
T  7138738 ctttctttcctttcactttc 7138719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 36119547 - 36119650
Alignment:
Q  79 atctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatcttt 178  Q
    ||||||||||||| ||| |||||| |||||||||| ||| | |||||||||||||||||||  ||| |||| |||   ||||| |||||||| |||||||    
T  36119547 atctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatcctctcattttctattctttttctttcctcatataatcttt 36119646  T
Q  179 cctt 182  Q
    ||||    
T  36119647 cctt 36119650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 29696437 - 29696566
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    ||||||||||||||||  |  |||||| | |||||||| | | | |||||||||||||||||| | |||||||| | |   ||||| || ||||||||||    
T  29696437 tagatctttctttccttaacctttctatttcactttctttcataccaaacaaccaaaacaatctcctcactttctactctttttctttcttcatacaatc 29696536  T
Q  176 tttccttttactatctttcctcttactttc 205  Q
    ||||||||  |||||||||| || ||||||    
T  29696537 tttcctttctctatctttcccctcactttc 29696566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 31518463 - 31518334
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    ||||||||||||||||   | ||||||||||||||| | ||| | ||||||||||  |||||||||| | |||| | || |||||| |||| | ||||||    
T  31518463 tagatctttctttcctttcactttctaatccactttatcttataccaaacaaccatgacaatccctttattttctacttactttctttccttacacaatc 31518364  T
Q  176 tttccttttactatctttcctcttactttc 205  Q
    |||||| |  ||||||||||| | ||||||    
T  31518363 tttcctatctctatctttcctttcactttc 31518334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 23544194 - 23544135
Alignment:
Q  79 atctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatc 138  Q
    ||||||||||||| ||| |||||| |||||||||| ||| | ||||||||||||||||||    
T  23544194 atctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatc 23544135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 48706976 - 48706909
Alignment:
Q  82 tttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttc 149  Q
    |||||||||||||| |||||| |||||||||| ||  | |||||||||||||||||||  ||||||||    
T  48706976 tttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaacaatcctctcactttc 48706909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 50501027 - 50501106
Alignment:
Q  142 tcactttccatttcctttctatcctcatacaatctttccttttactatctttcctcttactttctcttctcatccaaaca 221  Q
    |||||||| | || ||||| ||||||  |||||| |||||| |||| |||||||| ||||||| ||||||||||||||||    
T  50501027 tcactttctacttactttcaatcctctaacaatcattccttctactttctttccttttactttttcttctcatccaaaca 50501106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 51783635 - 51783582
Alignment:
Q  170 acaatctttccttttactatctttcctcttactttctcttctcatccaaacata 223  Q
    |||||||||||| ||||||||||| |  | ||||||| ||||||||||||||||    
T  51783635 acaatctttcctcttactatcttttccttcactttcttttctcatccaaacata 51783582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 39911728 - 39911680
Alignment:
Q  173 atctttccttttactatctttcctcttactttctcttctcatccaaaca 221  Q
    ||||||||| |||||||||||||||| ||||||| || | |||||||||    
T  39911728 atctttcctcttactatctttcctctcactttcttttgtgatccaaaca 39911680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 45043356 - 45043304
Alignment:
Q  171 caatctttccttttactatctttcctcttactttctcttctcatccaaacata 223  Q
    ||||||||| ||| ||||||||| || ||||||||| || |||||||||||||    
T  45043356 caatctttcttttcactatcttttcttttactttctattttcatccaaacata 45043304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 228
Target Start/End: Complemental strand, 20654768 - 20654618
Alignment:
Q  78 gatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatctt 177  Q
    |||| ||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||  |||||||||| | |  |||  |||||||||||||||    
T  20654768 gatcattctttcctccaactttctaatccattttctcttaaaccaaacaaccaaaacaatcctctcactttccactcctcttcgttcctcatacaatctt 20654669  T
Q  178 tccttttactatctttcctcttactttctcttctcatccaaacatagccta 228  Q
    || |||  || |||||||| | |||||| ||  ||| ||||||| ||||||    
T  20654668 tcttttctctttctttcctttcactttcactcttcaaccaaacaaagccta 20654618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 39144528 - 39144425
Alignment:
Q  78 gatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatctt 177  Q
    ||||||||||||||  ||||||||| |||||||||| ||  | |||||||||||||||||||||| |||||| |||   ||||| | |||||| ||||||    
T  39144528 gatctttctttcctttaattttctattccactttcttttgtaccaaacaaccaaaacaatccctttactttctattctttttcttttctcatataatctt 39144429  T
Q  178 tcct 181  Q
    ||||    
T  39144428 tcct 39144425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 26108628 - 26108507
Alignment:
Q  104 tccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatctttccttttactatctttcctcttactt 203  Q
    |||||||||| ||| | ||||||||||||  |||||  | ||||||||||  |||||| | || |||||||||||||||| ||||| |||||||| ||||    
T  26108628 tccactttctcttataccaaacaaccaaattaatcctcttactttccattcactttcttttcttatacaatctttcctttcactatatttcctctcactt 26108529  T
Q  204 tctcttctcatccaaacatagc 225  Q
    ||  ||  || |||||||||||    
T  26108528 tccttttgcaaccaaacatagc 26108507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 4921525 - 4921600
Alignment:
Q  121 caaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatctttccttttactatctttcct 196  Q
    |||||||||||||||||||| ||| |||||| |  |||||| | |||||||||||||||||||  || ||||||||    
T  4921525 caaacaaccaaaacaatcccctcattttccactctctttcttttctcatacaatctttcctttatctttctttcct 4921600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 19555227 - 19555285
Alignment:
Q  80 tctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatc 138  Q
    |||||||||||| ||| |||||| |||||||||| ||| | ||||||||||||||||||    
T  19555227 tctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatc 19555285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 22963994 - 22963908
Alignment:
Q  141 ttcactttccatttcctttctatcctcatacaatctttccttttactatctttcctcttactttctcttctcatccaaacatagcct 227  Q
    ||||||||||  || |||||| ||||   |||||||||||| ||||| |||||||||| ||||||| || | ||||||||| |||||    
T  22963994 ttcactttcctcttactttctctcctttaacaatctttcctcttactttctttcctctcactttcttttgtgatccaaacaaagcct 22963908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 35100536 - 35100483
Alignment:
Q  170 acaatctttccttttactatctttcctcttactttctcttctcatccaaacata 223  Q
    |||||| ||||| ||||||||||||||  |||||||| ||||| ||||||||||    
T  35100536 acaatcattcctcttactatctttccttctactttcttttctcttccaaacata 35100483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 29078474 - 29078370
Alignment:
Q  78 gatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatctt 177  Q
    |||||||||||||| ||| |||||| |||||||||| ||| | |||||||||||||||||||| |||||||| ||| | ||||| | |||||  ||||||    
T  29078474 gatctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatcccctcactttctattccttttcttttctcatttaatctt 29078375  T
Q  178 tcctt 182  Q
    |||||    
T  29078374 tcctt 29078370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 227
Target Start/End: Complemental strand, 3601872 - 3601727
Alignment:
Q  82 tttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatctttcct 181  Q
    |||||||||| |||||||||| |||||||||| ||  |||||||||||||||||||||  |||||||| | |   ||||| |||| | ||||||||||||    
T  3601872 tttctttccttcaattttctactccactttcttttgtatcaaacaaccaaaacaatcctctcactttctactctttttctttccttaaacaatctttcct 3601773  T
Q  182 tttactatctttcctcttactttctcttctcatccaaacatagcct 227  Q
    ||  |  |||||||| | ||||||| |  ||||||||||| |||||    
T  3601772 ttcccattctttcctttcactttctttggtcatccaaacaaagcct 3601727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 6191896 - 6191767
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    |||||| |||||||||| || ||| ||||||||||||| ||||| |||||||||||||||||||  |||||||||| |    |||| |||||||| ||||    
T  6191896 tagatcattctttcctcaaactttttaatccactttctcttaaaccaaacaaccaaaacaatcctctcactttccactcttcttctttcctcatataatc 6191797  T
Q  176 tttccttttactatctttcctcttactttc 205  Q
    |||| |||  || |||||||| | ||||||    
T  6191796 tttcttttctctttctttcctttcactttc 6191767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 31642507 - 31642610
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatc 175  Q
    |||||||||||||||| ||| |||||| |  ||||||| ||| | ||||||||||||||||||| ||||||||||| |  |||| | | |||||||||||    
T  31642507 tagatctttctttccttcaactttctactttactttcttttataccaaacaaccaaaacaatcctttcactttccactctctttattttctcatacaatc 31642606  T
Q  176 tttc 179  Q
    ||||    
T  31642607 tttc 31642610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 13481528 - 13481455
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttc 149  Q
    |||||||||||||||||||| |||||| |||||||||  ||  | |||||||||||||||||||  ||||||||    
T  13481528 tagatctttctttcctccaactttctattccactttcccttgtaccaaacaaccaaaacaatcctctcactttc 13481455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 6150125 - 6150067
Alignment:
Q  170 acaatctttccttttactatctttcctcttactttctcttctcatccaaacatagccta 228  Q
    ||||||||||||||||||||||||||| | ||||||| |  ||||||||||| ||||||    
T  6150125 acaatctttccttttactatctttcctttcactttctttgatcatccaaacagagccta 6150067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 925753 - 925855
Alignment:
Q  107 actttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatctttccttttactatctttcctcttactttct 206  Q
    ||||||| ||| | |||||||||||| ||||||  | |||||||| |   ||| | |||| |||||||||||||||| ||||||||||||   |||||||    
T  925753 actttctcttataccaaacaaccaaatcaatcctcttactttccactctttttttttccttatacaatctttcctttcactatctttccttacactttct 925852  T
Q  207 ctt 209  Q
    |||    
T  925853 ctt 925855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 6271734 - 6271809
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttcca 151  Q
    |||||||||||||||| |||||||||| | |||||||| ||||| |||||||| ||||||||| ||||||||||||    
T  6271734 tagatctttctttccttcaattttctacttcactttcttttaaaccaaacaactaaaacaatcacttcactttcca 6271809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 34516336 - 34516440
Alignment:
Q  78 gatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatctt 177  Q
    ||||||||||||||  || |||| | |||||||||| ||| | |||||||||||||||||||  |||||||| |||   ||||| |||||||| ||||||    
T  34516336 gatctttctttcctttaactttccattccactttcttttataccaaacaaccaaaacaatcctctcactttctattctttttctttcctcatataatctt 34516435  T
Q  178 tcctt 182  Q
    |||||    
T  34516436 tcctt 34516440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 33858917 - 33859007
Alignment:
Q  107 actttctattaaatcaaacaaccaaaacaatcccttcactttccatttcctttctatcctcatacaatctttccttttactatctttcctc 197  Q
    ||||||| ||| | |||||||||||| ||||||  | |||||||| |   ||||| |||| |||||||||||| ||| |||||||||||||    
T  33858917 actttctcttataccaaacaaccaaatcaatcctcttactttccactcattttctttccttatacaatctttcgtttcactatctttcctc 33859007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 2208 - 2135
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttc 149  Q
    |||||||||||||||||||| |||||| |||||||||  ||  | |||||||||||||||||||  ||||||||    
T  2208 tagatctttctttcctccaactttctattccactttcccttgtaccaaacaaccaaaacaatcctctcactttc 2135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0392 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 860 - 933
Alignment:
Q  76 tagatctttctttcctccaattttctaatccactttctattaaatcaaacaaccaaaacaatcccttcactttc 149  Q
    |||||||||||||||| |||  ||||| | |||||||| ||| |||||||||| ||||||||||  ||||||||    
T  860 tagatctttctttccttcaacattctacttcactttctcttatatcaaacaactaaaacaatcctctcactttc 933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 4149 - 4100
Alignment:
Q  174 tctttccttttactatctttcctcttactttctcttctcatccaaacata 223  Q
    |||||||||| ||||||||||||  |||||||| || |||||||||||||    
T  4149 tctttcctttcactatctttccttctactttctattgtcatccaaacata 4100  T

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