View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9746_low_3 (Length: 440)
Name: NF9746_low_3
Description: NF9746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9746_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 5 - 425
Target Start/End: Complemental strand, 26275177 - 26274757
Alignment:
| Q |
5 |
ccacttgtttcttctcactcagacagctgttgcgtcatgctagatttatatatatgcatgtctttatttctttaggtacttgtacaacaactaagtaaac |
104 |
Q |
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| T |
26275177 |
ccacttgtttcttctctctcagacagctgttgtgtcatgctagatttatatatatgtatgtctttatttctttaggtacttgtacaacaactaagcaaac |
26275078 |
T |
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| Q |
105 |
tcattctaaaaatagatgagatgtcaaaagaaataattgttccttattgcttaatgtggaatttatgatatgtaattttactgataatgtaccagtacag |
204 |
Q |
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| T |
26275077 |
tcattctaaaaatagatgagatgtcaaaagaaataattgttccttattgcttaatgtggaatttatgatatgtaattttactgataatgtaccagtacag |
26274978 |
T |
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| Q |
205 |
aagtagttggaaataagagctacgtggagaagaccacaaagcactccaagcagtcgacccagaggtgtggttcttgtctatggtgtcaatcagggcaccg |
304 |
Q |
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| T |
26274977 |
aagtagttggaaataagagctacgcggagaagacaacaaagcactccaagcagtcgacccagaggtgtggttcttgtctatggtgtcaatcagggcaccg |
26274878 |
T |
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| Q |
305 |
atcgtttggagaatagcaatcggataataacaatcctaaaatcccaaatggatgaaacgaaatcatttgataaaataaagtagttattttgttctgtcgt |
404 |
Q |
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| T |
26274877 |
atcgtttggagaatagcaatcggataataacaatcctaaaatcccaaatggatgaaacgaaatcatttgataaaataaagtagttattttgttctgtcgt |
26274778 |
T |
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| Q |
405 |
ggatacttatagggtgcatgt |
425 |
Q |
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| T |
26274777 |
ggatacttatagggtgcatgt |
26274757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 26250930 - 26251015
Alignment:
| Q |
101 |
aaactcattctaaaaatagatgagatgtcaaaagaaataatt--gttccttattgcttaatgtggaatttatgata-tgtaatttt |
183 |
Q |
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| T |
26250930 |
aaactcattctaaaaatacatgagatgtcaaaagaaataactgagttccttagagcttaaggtggaatttatgatattgtaatttt |
26251015 |
T |
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