View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9746_low_30 (Length: 234)
Name: NF9746_low_30
Description: NF9746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9746_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 18737928 - 18738132
Alignment:
| Q |
18 |
ataaaaggcattattcacttcacattatcttcatactcagttgtttaatcttgaaacaattcaattttgttatatcttctcttttgcacattctcacaaa |
117 |
Q |
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| T |
18737928 |
ataaaaggcattattcacttcacattatcttcatactcagttgtttaatcttgaaacgattcaattttgttatatcttctcttttgcacattctcacaaa |
18738027 |
T |
|
| Q |
118 |
aaatctttcgaccatgaaaaacaacaaagaatcatctcttcacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactacaccc |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
18738028 |
aaatctttcaaccatgaaaaacaacaaagaatcatctcttcacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactgcactc |
18738127 |
T |
|
| Q |
218 |
tttgc |
222 |
Q |
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||||| |
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| T |
18738128 |
tttgc |
18738132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 18717257 - 18717466
Alignment:
| Q |
18 |
ataaaaggcattattcacttcacattatcttcatactcagttgtttaatcttgaaacaa-----ttcaattttgttatatcttctcttttgcacattctc |
112 |
Q |
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| T |
18717257 |
ataaaaggcattattcacttcacattatcttcatactcagttgtttaattttgaaacaacttctttcaattctgttatatcttctcttttgcacattctc |
18717356 |
T |
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| Q |
113 |
acaaaaaatctttcgaccatgaaaaacaacaaagaatcatctcttcacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaacta |
212 |
Q |
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| T |
18717357 |
acaaaaaatctttcaaccatgaaaaacaacacagaacaatctctttacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactg |
18717456 |
T |
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| Q |
213 |
caccctttgc |
222 |
Q |
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||| |||||| |
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| T |
18717457 |
cactctttgc |
18717466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 18648793 - 18649002
Alignment:
| Q |
18 |
ataaaaggcattattcacttcacattatcttcatactcagttgtttaatcttgaaacaa-----ttcaattttgttatatcttctcttttgcacattctc |
112 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |
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| T |
18648793 |
ataaaaggcattattcacttcacattatattcatactgagttgtttaatcttgaaacaacttctttcaattctgttatatcttctctttctcacattctc |
18648892 |
T |
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| Q |
113 |
acaaaaaatctttcgaccatgaaaaacaacaaagaatcatctcttcacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaacta |
212 |
Q |
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|||||||||||||| | |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18648893 |
acaaaaaatctttcaatcatgaagaacaacaaagaacaatctctttacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaacta |
18648992 |
T |
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| Q |
213 |
caccctttgc |
222 |
Q |
| |
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||| |||||| |
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| T |
18648993 |
cactctttgc |
18649002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 18684543 - 18684727
Alignment:
| Q |
36 |
ttcacattatcttcatactcagttgtttaatcttgaaacaa-----ttcaattttgttatatcttctcttttgcacattctcacaaaaaatctttcgacc |
130 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||||| ||| |
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| T |
18684543 |
ttcacattatattcatactcagttgtttaatcttgaaacaacttctttcaattctgttatatcttcactttctcacattctcaccaaaaatctttcaacc |
18684642 |
T |
|
| Q |
131 |
atgaaaaacaacaaagaatcatctcttcacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactacac |
215 |
Q |
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| T |
18684643 |
atgaaaaacaataaagaacaatctctttacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactacac |
18684727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 18671344 - 18671460
Alignment:
| Q |
106 |
cattctcacaaaaaatctttcgaccatgaaaaacaacaaagaatcatctcttcacaccattgatcttgatgattcatctttgaatcaagcttatgcaaca |
205 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18671344 |
cattctcacaaaaaatctttcaaccatgaaaaacaacaaagaaaaatctctttacaccattgatcttgatgattcatctttgaatcaagcttatgcaaca |
18671443 |
T |
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| Q |
206 |
gcaactacaccctttgc |
222 |
Q |
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|||||| ||| |||||| |
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| T |
18671444 |
gcaactgcactctttgc |
18671460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 18671291 - 18671340
Alignment:
| Q |
27 |
attattcacttcacattatcttcatactcagttgtttaatcttgaaacaa |
76 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
18671291 |
attattcacttcacattatcttcatactgagttgtttaatctagaaacaa |
18671340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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