View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9746_low_32 (Length: 212)

Name: NF9746_low_32
Description: NF9746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9746_low_32
NF9746_low_32
[»] chr8 (15 HSPs)
chr8 (1-212)||(3067809-3068020)
chr8 (64-212)||(3055370-3055518)
chr8 (64-207)||(3034508-3034651)
chr8 (74-207)||(3042560-3042693)
chr8 (68-212)||(3063773-3063917)
chr8 (150-206)||(3071454-3071510)
chr8 (68-132)||(3071546-3071610)
chr8 (1-68)||(3042469-3042533)
chr8 (74-138)||(3040349-3040413)
chr8 (150-206)||(3040447-3040503)
chr8 (1-64)||(3071635-3071698)
chr8 (1-64)||(3055289-3055349)
chr8 (1-54)||(3063952-3064002)
chr8 (1-64)||(3034427-3034487)
chr8 (104-212)||(3065889-3065997)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 3068020 - 3067809
Alignment:
Q  1 cattctattaatttaccatctggttatgttaatgtagaaaactactatgaaagtgaaactgtgggaactcaattggtctttgacggatcaggggacttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3068020 cattctattaatttaccatctggttatgttaatgtagaaaactactatgaaagtgaaactgtgggaactcaattggtctttgacggatcaggggacttgt 3067921  T
Q  101 atctcttgagagagaacaatgagaaatactatgtgtcaaaagaaaaggttaaagtctccactactaatttttatcttagagcaactcttaattttgatgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3067920 atctcttgagagagaacaatgagaaatactatgtgtcaaaagaaaaggttaaagtctccactactaatttttatcttagagcaactcttaattttgatgg 3067821  T
Q  201 agtgttcacact 212  Q
    ||||||||||||    
T  3067820 agtgttcacact 3067809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 3055370 - 3055518
Alignment:
Q  64 ggaactcaattggtctttgacggatcaggggacttgtatctcttgagagagaacaatgagaaatactatgtgtcaaaagaaaaggttaaagtctccacta 163  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||| |||||||| |  || ||  ||||||||| || |    
T  3055370 ggaactcaattggtctttgacagatcagggtacttgtatgtcttgggagagaacaatgagaaatacaatgtgtcagagcaagagagtaaagtctctacca 3055469  T
Q  164 ctaatttttatcttagagcaactcttaattttgatggagtgttcacact 212  Q
    || | |||||| |||| ||||||||||||||||||||||||||||||||    
T  3055470 ctgaattttatgttagggcaactcttaattttgatggagtgttcacact 3055518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 207
Target Start/End: Original strand, 3034508 - 3034651
Alignment:
Q  64 ggaactcaattggtctttgacggatcaggggacttgtatctcttgagagagaacaatgagaaatactatgtgtcaaaagaaaaggttaaagtctccacta 163  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||| |||||||| |  || ||  ||||||||| || |    
T  3034508 ggaactcaattggtctttgacagatcagggtacttgtatgtcttgggagagaacaatgagaaatacaatgtgtcagagcaagagagtaaagtctctacca 3034607  T
Q  164 ctaatttttatcttagagcaactcttaattttgatggagtgttc 207  Q
    ||  || |||||||||||||||||||||||||||||| ||||||    
T  3034608 ctctttattatcttagagcaactcttaattttgatggtgtgttc 3034651  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 74 - 207
Target Start/End: Original strand, 3042560 - 3042693
Alignment:
Q  74 tggtctttgacggatcaggggacttgtatctcttgagagagaacaatgagaaatactatgtgtcaaaagaaaaggttaaagtctccactactaattttta 173  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||||  ||||||| |||||||| ||||| ||  ||||||||| || ||   || |||    
T  3042560 tggtctttgacagatcaggggacctgtatgtcttgagagagaacaatacgaaatacaatgtgtcagaagaagagagtaaagtctctaccacgctttatta 3042659  T
Q  174 tcttagagcaactcttaattttgatggagtgttc 207  Q
    ||||||||||||||||||||||||||| ||||||    
T  3042660 tcttagagcaactcttaattttgatggtgtgttc 3042693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 3063917 - 3063773
Alignment:
Q  68 ctcaattggtctttgacggatcaggggacttgtatctcttgagagagaacaatgagaaatactatgtgtcaaaagaaaaggttaaagtctccactactaa 167  Q
    ||||| |||||||||||  ||||||| |||||||| | ||| |||||||||||||||||||| ||||||   ||||| ||  ||| ||||| || ||  |    
T  3063917 ctcaactggtctttgacaaatcagggtacttgtatgttttgggagagaacaatgagaaatacaatgtgttcgaagaagagagtaacgtctcgaccacaca 3063818  T
Q  168 tttttatcttagagcaactcttaattttgatggagtgttcacact 212  Q
     ||||||||||||||||||||||||||||||||||||||||||||    
T  3063817 attttatcttagagcaactcttaattttgatggagtgttcacact 3063773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 3071510 - 3071454
Alignment:
Q  150 taaagtctccactactaatttttatcttagagcaactcttaattttgatggagtgtt 206  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3071510 taaagtctcccctactaatttttatcttagagcaactcttaattttgatggagtgtt 3071454  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 3071610 - 3071546
Alignment:
Q  68 ctcaattggtctttgacggatcaggggacttgtatctcttgagagagaacaatgagaaatactat 132  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||||| |||||||| ||||    
T  3071610 ctcaattggtctttgacaaatcaggagacttgtatctcttgagagagaacagtgagaaattctat 3071546  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3042469 - 3042533
Alignment:
Q  1 cattctattaatttaccatctggttatgttaatgtagaaaactactatgaaagtgaaactgtgggaac 68  Q
    ||||||||||||||||||||||||| || |||||   |||||||||||||||||||||||| ||||||    
T  3042469 cattctattaatttaccatctggttttgctaatg---aaaactactatgaaagtgaaactgcgggaac 3042533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 3040349 - 3040413
Alignment:
Q  74 tggtctttgacggatcaggggacttgtatctcttgagagagaacaatgagaaatactatgtgtca 138  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||  |||| |||| |||||    
T  3040349 tggtctttgacagatcaggagacttgtatctcttgagagagaacaatggtaaattctatatgtca 3040413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 3040447 - 3040503
Alignment:
Q  150 taaagtctccactactaatttttatcttagagcaactcttaattttgatggagtgtt 206  Q
    |||||||||||| ||| |||||||||||||||||||  |||||||||||||||||||    
T  3040447 taaagtctccacaactgatttttatcttagagcaacaattaattttgatggagtgtt 3040503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3071698 - 3071635
Alignment:
Q  1 cattctattaatttaccatctggttatgttaatgtagaaaactactatgaaagtgaaactgtgg 64  Q
    ||||||||||  |||||||||||| ||| ||||| |||||||||||||||||||| ||||||||    
T  3071698 cattctattatcttaccatctggtaatgctaatgaagaaaactactatgaaagtggaactgtgg 3071635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3055289 - 3055349
Alignment:
Q  1 cattctattaatttaccatctggttatgttaatgtagaaaactactatgaaagtgaaactgtgg 64  Q
    |||||||||||||||||||||||| ||| ||||   ||||||||||||||||||| ||||||||    
T  3055289 cattctattaatttaccatctggtaatgctaat---gaaaactactatgaaagtggaactgtgg 3055349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3064002 - 3063952
Alignment:
Q  1 cattctattaatttaccatctggttatgttaatgtagaaaactactatgaaagt 54  Q
    |||||||||||||||||||||||||||||||||   |||||||||| |||||||    
T  3064002 cattctattaatttaccatctggttatgttaat---gaaaactactttgaaagt 3063952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3034427 - 3034487
Alignment:
Q  1 cattctattaatttaccatctggttatgttaatgtagaaaactactatgaaagtgaaactgtgg 64  Q
    ||||||||||||||||||||||||  || ||||   ||||||||||||||||||| ||||||||    
T  3034427 cattctattaatttaccatctggtagtgctaat---gaaaactactatgaaagtggaactgtgg 3034487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 3065997 - 3065889
Alignment:
Q  104 tcttgagagagaacaatgagaaatactatgtgtcaaaagaaaaggttaaagtctccactactaatttttatcttagagcaactcttaattttgatggagt 203  Q
    |||| |||||||||| |||||||||| |||||| | || || ||  |||||| || |  ||  ||||||| ||||||||||||||||||||||| || ||    
T  3065997 tcttcagagagaacagtgagaaatacaatgtgtaagaaaaagagagtaaagtttcaaacacacatttttaacttagagcaactcttaattttgacggggt 3065898  T
Q  204 gttcacact 212  Q
    ||| |||||    
T  3065897 gtttacact 3065889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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