View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9746_low_5 (Length: 427)
Name: NF9746_low_5
Description: NF9746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9746_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 14 - 417
Target Start/End: Complemental strand, 29661643 - 29661240
Alignment:
| Q |
14 |
gtaaatatgctactttatctcccatggaaaaacagaaaacatgaaaagaaaatattcttggaatccatcacaccctataatacttttttcaaccttgaac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29661643 |
gtaaatatgctactttatctcccatggaaaaacagaaaacatgaaaagaaaatattcttggaatccatcacaccctataatacttttttcaaccttgaac |
29661544 |
T |
|
| Q |
114 |
cactctacttccctagtcatatgtatttgcataccttgaaacaaacacgttgtaagagatcgcctacaatatattctgaaagatacaatcttaatattga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29661543 |
cactctacttccctagtcatatgtatttgcataccttgaaacaaacacgttgtaagagatcgcctacaatatattctgaaagatacaatcttaatattga |
29661444 |
T |
|
| Q |
214 |
gatatttttcatatatcctaacagccattattagacctattccaatagatataatttgtttcgaattggggtctcagttaatagaaaggggtatgattgt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29661443 |
gatatttttcatatatcctaacagccattattagacctattccaatagatataatttgtttcgaattggggtctcggttaatagaaaggggtatgattgt |
29661344 |
T |
|
| Q |
314 |
tgcagttaggaagagttcaattttttaatataggttatcttctacttttcctatttacttgcagaagaccaacattattttcactgttttagatctccgc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29661343 |
tgcagttaggaagagttcaattttttaatataggttatcttctacttttcctatttacttgcagaagaccaacattattttcactgttttagatctccgc |
29661244 |
T |
|
| Q |
414 |
ctat |
417 |
Q |
| |
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|||| |
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| T |
29661243 |
ctat |
29661240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 33184506 - 33184828
Alignment:
| Q |
15 |
taaatatgctactttatctcccatggaaaaacagaaaacatgaa-aagaaaatattcttggaatccatcacaccctataatacttttttcaaccttgaac |
113 |
Q |
| |
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|||||||| |||||||||| |||| |||||| |||||||| || || |||||||||||| ||||||| | |||| |||||||||||| ||||| |
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| T |
33184506 |
taaatatg-tactttatcttccattgaaaaagagaaaacaccaagaaaaaaatattcttgcaatccattatacccc-taatacttttttaaacct----- |
33184598 |
T |
|
| Q |
114 |
cactct-acttccctagtcatatgtatttgcataccttgaaacaaacacgttgtaagagatcgcctacaata--------tattctgaaagatacaatct |
204 |
Q |
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|| ||| |||| |||||| |||| ||||||||||||| |||||||||| | ||||||||| ||||||||| |||||||||||||||| ||| |
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| T |
33184599 |
caatcttactttcctagtaatatatatttgcatacctcaaaacaaacacactataagagatcacctacaatactgtaacatattctgaaagatacagtct |
33184698 |
T |
|
| Q |
205 |
taatattg---agatatttttcatatatcctaacagccattattagacctattccaatagatat-aatttgtttcgaattggggtctcagttaatagaaa |
300 |
Q |
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||||||| |||||||| |||| |||||||||||| | |||||||||||||||| | ||||| | ||| |||| ||||||| | ||||||| |||||| |
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| T |
33184699 |
taatattattaagatatttctcatgtatcctaacagctagtattagacctattccagttgatatgagtttttttctaattgggatgtcagttattagaaa |
33184798 |
T |
|
| Q |
301 |
ggggtatgattgttgcagttaggaagagtt |
330 |
Q |
| |
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| ||| ||||||||||| ||||||||||| |
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| T |
33184799 |
gaggtttgattgttgcaactaggaagagtt |
33184828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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