View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9747_high_1 (Length: 437)
Name: NF9747_high_1
Description: NF9747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9747_high_1 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 40378049 - 40377613
Alignment:
| Q |
1 |
atggaaaagaaataagtatgatgttatttgaattttgatcacatagtaaagccaaagggagtgttggaaggtatatttgtctaccgtgaatgttctcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40378049 |
atggaaaagaaataagtatgatgttatttgaattttgatcacatagaaaaactaaagggagtgttggaaggtatatttgtctaccatgaatgttctcttc |
40377950 |
T |
|
| Q |
101 |
aaggcttcctcttgataagaaatcatagaccaagagtaggttgccattctcgaagcagaacccaataaggtaaataatgtttttgtgatgcaatgtagtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| ||| |
|
|
| T |
40377949 |
aaggcttcctcttgataagaaatcatagaccaagagtagattgccattctcgaagcagaacccgatgagggaaataatgtttttgtgatgcaatgtggtg |
40377850 |
T |
|
| Q |
201 |
atgatttctatttccaaaagaaactctttcaaaacatcatatgaaggctttaggatcttgactgcaagttctttgccatcacgaaggcaccctcggtaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40377849 |
atgatttctatttccaaaagaaactctttcaaaacatcatacgaaggctttaggatcttgacagcaagttctttgccatcacgaaggcagcctcggtaaa |
40377750 |
T |
|
| Q |
301 |
ccttactacttcctcctttcccgatcaagttttctgaaatcatatttgtaataatattgttaaagataaaatggttttgttaaaaccgaacacagtcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40377749 |
ccttactacttcctcctttcccaataaaattttctgaaatcatatttgtaataatcttgttaaaaataaaatggttttgttaaaaccgaacacagtcaaa |
40377650 |
T |
|
| Q |
401 |
cttaattaatcctaagaaacaacccaggcaaaaaatt |
437 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
40377649 |
cttaattaatactaagaaacaaaccaggcaaaaaatt |
40377613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 44155901 - 44155954
Alignment:
| Q |
80 |
tctaccgtgaatgttctcttcaaggcttcctcttgataagaaatcatagaccaa |
133 |
Q |
| |
|
||||||||||| ||| ||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
44155901 |
tctaccgtgaaggttttcttctaggcttcctcttgataaaaaatcatataccaa |
44155954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 98 - 342
Target Start/End: Complemental strand, 10259311 - 10259067
Alignment:
| Q |
98 |
ttcaaggcttcctcttgataagaaatcatagaccaagagtaggttgccattctcgaagcagaacccaataaggtaaataatgtttttgtgatgcaatgta |
197 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| || || ||| ||| || |||||||| ||||| || |||| ||||||||||||||||| | |
|
|
| T |
10259311 |
ttcaaggctccctcttgataagaaatcatagaccaaaagaagattgtcatcttcaaagcagaatccaatgagagaaatgatgtttttgtgatgcaaagcg |
10259212 |
T |
|
| Q |
198 |
gtgatgatttctatttccaaaagaaactctttcaaaacatcatatgaaggctttaggatcttgactgcaagttctttgccatcacgaaggcaccctcggt |
297 |
Q |
| |
|
||||| |||||||| || |||| |||||| ||||||||||||| |||||||||| |||||| || |||||||| || |||||| | ||||| ||| | |
|
|
| T |
10259211 |
gtgataatttctatctctaaaacaaactccttcaaaacatcatcagaaggctttaagatcttaacagcaagttcctttccatcagggaggcaacctttat |
10259112 |
T |
|
| Q |
298 |
aaaccttactacttcctcctttcccgatcaagttttctgaaatca |
342 |
Q |
| |
|
||||| ||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
10259111 |
aaacccgactacttcctcctttaccaatcaaattttctgaaatca |
10259067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University