View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9747_high_9 (Length: 239)

Name: NF9747_high_9
Description: NF9747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9747_high_9
NF9747_high_9
[»] chr2 (14 HSPs)
chr2 (2-223)||(11192274-11192495)
chr2 (3-214)||(11170862-11171073)
chr2 (6-209)||(11148242-11148445)
chr2 (117-202)||(11135652-11135737)
chr2 (144-210)||(11109286-11109352)
chr2 (6-66)||(11117894-11117954)
chr2 (6-86)||(11145085-11145165)
chr2 (8-70)||(11109426-11109488)
chr2 (11-45)||(11198311-11198345)
chr2 (8-56)||(11095314-11095362)
chr2 (8-56)||(11103455-11103503)
chr2 (6-43)||(10794280-10794317)
chr2 (153-202)||(11117758-11117807)
chr2 (8-61)||(11176981-11177034)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 11192274 - 11192495
Alignment:
Q  2 tataatacatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgaggatctgttcgagaaacgtttgctaagacactttgg 101  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||| |||||||    
T  11192274 tataatacatacttgaacaaaacaatcatgaaaatgaagcctaatgaaactggcaaggatacgaggatctgtctgagaaacgtttgctaagatactttgg 11192373  T
Q  102 acaatggaagtgacatttggacatgtgtccttatagaagttaggatcaagttgtgcatttgaagagaagggaaaccctccaagcacaactactacacagc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11192374 acaatggaagtgacatttggacatgtgtccttatagaagttaggatcaagttgtgcatttgaagagaagggaaaccctccaagcacaaccactacacagc 11192473  T
Q  202 acaaagctgccaatgtgagatg 223  Q
    |||||||||| |||||||||||    
T  11192474 acaaagctgctaatgtgagatg 11192495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 214
Target Start/End: Complemental strand, 11171073 - 11170862
Alignment:
Q  3 ataatacatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgaggatctgttcgagaaacgtttgctaagacactttgga 102  Q
    ||||||| |||||||||||| |||||||| ||||||||||| || ||||| ||||| ||||||||||||||   |||||| |||  ||  ||     | |    
T  11171073 ataatacttacttgaacaaagcaatcatggaagtgaagccttatcaaactagcaagtatacgaggatctgtcttagaaacatttcttagtacttcacgaa 11170974  T
Q  103 caatggaagtgacatttggacatgtgtccttatagaagttaggatcaagttgtgcatttgaagagaagggaaaccctccaagcacaactactacacagca 202  Q
    ||||||||   ||||| ||||| |||||| ||||||||  |  |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  11170973 caatggaatgaacattaggacaagtgtccctatagaaggaattatcaagttgtgcatttgatgagaagggtaaccctccaagcacaactactacacagca 11170874  T
Q  203 caaagctgccaa 214  Q
    ||||||||||||    
T  11170873 caaagctgccaa 11170862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 11148445 - 11148242
Alignment:
Q  6 atacatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgaggatctgttcgagaaacgtttgctaagacactttggacaa 105  Q
    |||||||||||||||||||| ||||||||||||||||| |  | |||  ||||||||||||||||| |   ||||||  ||  || |||     | ||||    
T  11148445 atacatacttgaacaaaacagtcatgaaagtgaagcctgacaagactaccaagcatacgaggatctttcttagaaacacttcttatgacttcacgaacaa 11148346  T
Q  106 tggaagtgacatttggacatgtgtccttatagaagttaggatcaagttgtgcatttgaagagaagggaaaccctccaagcacaactactacacagcacaa 205  Q
    ||||| | ||||||||||| |||| | | || |||   ||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||    
T  11148345 tggaactaacatttggacaagtgttcctgtaaaaggatggatcaagttgtgcatttgaagagaagggtaaccctccaagcacaaccacaatacagcacaa 11148246  T
Q  206 agct 209  Q
    ||||    
T  11148245 agct 11148242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 11135737 - 11135652
Alignment:
Q  117 tttggacatgtgtccttatagaagttaggatcaagttgtgcatttgaagagaagggaaaccctccaagcacaactactacacagca 202  Q
    |||||||| |||||| ||||||||  ||||||||||||||||| ||| |||||||| ||||||||||| ||||| |||||||||||    
T  11135737 tttggacaagtgtccctatagaaggaaggatcaagttgtgcatctgaggagaagggtaaccctccaagaacaaccactacacagca 11135652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 11109352 - 11109286
Alignment:
Q  144 ggatcaagttgtgcatttgaagagaagggaaaccctccaagcacaactactacacagcacaaagctg 210  Q
    ||||||||||||||||||||||||||||| |  ||||||| |||||| |||||||||||||||||||    
T  11109352 ggatcaagttgtgcatttgaagagaagggtagtcctccaaacacaaccactacacagcacaaagctg 11109286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 11117954 - 11117894
Alignment:
Q  6 atacatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgag 66  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||| ||| |||| ||||    
T  11117954 atacatacttgaacgaaacaatcatgaaagtgaagcctaatgatactcgcaggcattcgag 11117894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 11145165 - 11145085
Alignment:
Q  6 atacatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgaggatctgttcgagaaacgttt 86  Q
    |||||||||||||||||||| ||||| |||||||||||||  | ||| ||||||||||||| ||||||   ||||||||||    
T  11145165 atacatacttgaacaaaacagtcatggaagtgaagcctaacaagacttgcaagcatacgagtatctgtcttagaaacgttt 11145085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 11109488 - 11109426
Alignment:
Q  8 acatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgaggatc 70  Q
    |||||||||||| |||||||||||||| |||||||| |||| ||||||| |||| || |||||    
T  11109488 acatacttgaacgaaacaatcatgaaaatgaagcctgatgatactggcaggcattcggggatc 11109426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 11198345 - 11198311
Alignment:
Q  11 tacttgaacaaaacaatcatgaaagtgaagcctaa 45  Q
    |||||||||||||||||||||||||||||||||||    
T  11198345 tacttgaacaaaacaatcatgaaagtgaagcctaa 11198311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 11095362 - 11095314
Alignment:
Q  8 acatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggca 56  Q
    ||||||||||||||| |||||||| || ||||||||||||| |||||||    
T  11095362 acatacttgaacaaagcaatcatggaaatgaagcctaatgagactggca 11095314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 11103503 - 11103455
Alignment:
Q  8 acatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggca 56  Q
    ||||||||||||||| ||||||||||| |||||||| |||| |||||||    
T  11103503 acatacttgaacaaagcaatcatgaaaatgaagcctgatgagactggca 11103455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 10794280 - 10794317
Alignment:
Q  6 atacatacttgaacaaaacaatcatgaaagtgaagcct 43  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  10794280 atacttacttgaacgaaacaatcatgaaagtgaagcct 10794317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 11117807 - 11117758
Alignment:
Q  153 tgtgcatttgaagagaagggaaaccctccaagcacaactactacacagca 202  Q
    |||||||||||||||||||| |  ||||||| |||||| |||||||||||    
T  11117807 tgtgcatttgaagagaagggtagtcctccaaacacaacaactacacagca 11117758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 11177034 - 11176981
Alignment:
Q  8 acatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcat 61  Q
    |||||||||||||||||| |||||||| || |||||||||| |||  |||||||    
T  11177034 acatacttgaacaaaacagtcatgaaaatgtagcctaatgagactaccaagcat 11176981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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