View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9747_low_10 (Length: 239)
Name: NF9747_low_10
Description: NF9747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9747_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 9853541 - 9853341
Alignment:
| Q |
23 |
cggtttctaatcgcaagaagaagnnnnnnnngtaatcggatttgacttcaaaagtattataaaaaattacagcaaatgacttttggaattacaacaatct |
122 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9853541 |
cggtttctaatcgcaagaagaagaaaaaaaagtaatcggatttgacttcaaaagtattataaaaaattacagaaaatgacttttggaattacaacaatct |
9853442 |
T |
|
| Q |
123 |
ttcatcaatctttgcacatgatgataacagagcaatggaacagaagatttcaaacagtatcatattagcattcagtttaaagcaacaaattaagaatatt |
222 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9853441 |
ttcatcaatctttgcacatgatgataacaaagcaatggaacagaagatttcaaacagtatcatattagcattcagtttaaagcaacaaattaagaatatt |
9853342 |
T |
|
| Q |
223 |
a |
223 |
Q |
| |
|
| |
|
|
| T |
9853341 |
a |
9853341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9842617 - 9842396
Alignment:
| Q |
1 |
ctgttcttttttatactatagtcggtttctaatcgcaagaagaagnnnnnnnn--gtaatcggatttgacttcaaaagtattataaaaaattacagcaaa |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| ||| ||| |
|
|
| T |
9842617 |
ctgttcttttttatactatagtcggtttctaatcgcaagaagaagaagaaaaaaagtaatcgtatttgacttcaaaagtattgtaaaaaattgcagaaaa |
9842518 |
T |
|
| Q |
99 |
tgacttttggaattacaacaatctttcatcaatctttgcacatgatgataacagagcaatggaacagaagatttcaaacagtatcatattagcattcagt |
198 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9842517 |
tgactcttggaattacaacaatctttcatcaatctttgcaca---tgataacaaagcaacggaacagaagatttcaaacagtatcatattagcatttagt |
9842421 |
T |
|
| Q |
199 |
ttaaagcaacaaattaagaatatta |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
9842420 |
ttaaagcaacaaattaagaatatta |
9842396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 11772810 - 11772735
Alignment:
| Q |
147 |
taacagagcaatggaacagaagatttcaaacagtatcatattagcattcagtttaaagcaacaaattaagaatatta |
223 |
Q |
| |
|
||||| |||| || ||||||| |||| |||||||||||||| | |||||| ||||||| ||||||||||||||||| |
|
|
| T |
11772810 |
taacaaagcagtgaaacagaaaatttgaaacagtatcatatgaacattca-cttaaagctacaaattaagaatatta |
11772735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University