View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9747_low_3 (Length: 377)
Name: NF9747_low_3
Description: NF9747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9747_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 41103994 - 41104353
Alignment:
| Q |
18 |
ccatttggttataagagtgcgtgcggtttctatgttttcatcaactattgcgtctgagaatgttttgttttgtggtgatggtaacggtgatgatgatttg |
117 |
Q |
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| T |
41103994 |
ccatttggttataagagtgcgtgcggtttctatgttttcatcaactattgcgtctgagaatgttttgttttgtggtgatggtaacggtgatgatgatttg |
41104093 |
T |
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| Q |
118 |
ggtggtgatggtttgaagaaaaagaagtttctaggtttagacattattgaagggtttatttgtgtgtgattaattaatgtgtttgttgaggttttaaagt |
217 |
Q |
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| T |
41104094 |
ggtggtgatggtttgaagaaaaagaagtttctaggtttagacattattgaagggtttatttgtgtgtgattaattaatgtgtttgttgaggttttaaagt |
41104193 |
T |
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| Q |
218 |
tgagtttgtgaagtgcttttttctagtttggagtgttgggggttgaagggtttttatagaagtggaacatttgaagatagtcaagtcttgtttgaggtga |
317 |
Q |
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| T |
41104194 |
tgagtttgtgaagtgcttttttctagtttggagtgttgggggttgaagggtttttatagaagtggaacatttgaagatagttaagtcttgtttgaggtga |
41104293 |
T |
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| Q |
318 |
gaacgtaatcgtgtcagcgtgtggggaaggggaagtaaagacaagacaacagacgcggtt |
377 |
Q |
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| T |
41104294 |
gaacgtaatcgtgtcagcgtgtggggaatgggaagtaaagacaagacaacagacgcggtt |
41104353 |
T |
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