View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9747_low_4 (Length: 281)

Name: NF9747_low_4
Description: NF9747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9747_low_4
NF9747_low_4
[»] chr5 (9 HSPs)
chr5 (125-275)||(8546971-8547115)
chr5 (18-67)||(8546864-8546913)
chr5 (125-205)||(8638077-8638157)
chr5 (125-205)||(8645404-8645487)
chr5 (134-275)||(8536629-8536761)
chr5 (201-275)||(9004499-9004570)
chr5 (220-275)||(9073655-9073710)
chr5 (235-275)||(1599238-1599278)
chr5 (238-274)||(2844031-2844067)
[»] chr7 (1 HSPs)
chr7 (212-275)||(48360768-48360831)
[»] scaffold0627 (1 HSPs)
scaffold0627 (137-210)||(5796-5869)
[»] chr6 (1 HSPs)
chr6 (136-203)||(16717519-16717586)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 125 - 275
Target Start/End: Original strand, 8546971 - 8547115
Alignment:
Q  125 gcaattaagtgtagccatgaaaagaaaaaaggattcaattgcccctgttagggctagaagaagatgcaataaaggaaaaggaaaaggaaaagttgatgag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||| |||||||||||||||||||    
T  8546971 gcaattaagtgtagccatgaaaagaaaaaaggattcaattgcccctgttagggctagaagaagatgcaat------aaagaaaaaggaaaagttgatgag 8547064  T
Q  225 gcagacaatcatgatgaactttgcccttattttgataatctttcatctcac 275  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8547065 gcagacaatcatgatgaactttgcccttattttgataatcttccatctcac 8547115  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 8546864 - 8546913
Alignment:
Q  18 cactgttctgattttatgtttaatcgaaacaatcttatgtgttttgctct 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546864 cactgttctgattttatgtttaatcgaaacaatcttatgtgttttgctct 8546913  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 8638157 - 8638077
Alignment:
Q  125 gcaattaagtgtagccatgaaaagaaaaaaggattcaattgcccctgttagggctagaagaagatgcaataaaggaaaagg 205  Q
    |||||| ||||||||||||||||||||||||| ||||||  | | || |||||||||   |||||||||||||| ||||||    
T  8638157 gcaattcagtgtagccatgaaaagaaaaaagggttcaataactcttgctagggctagcctaagatgcaataaagcaaaagg 8638077  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 8645487 - 8645404
Alignment:
Q  125 gcaattaagtgtagccatgaaaagaaaaaaggattcaattgcccctgttagggctag---aagaagatgcaataaaggaaaagg 205  Q
    |||||| ||||||||||||||||||||||| | ||||||  | |||| |||||||||   ||||||| ||||||||| ||||||    
T  8645487 gcaattcagtgtagccatgaaaagaaaaaacggttcaataactcctgctagggctagcctaagaagaagcaataaagcaaaagg 8645404  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 275
Target Start/End: Complemental strand, 8536761 - 8536629
Alignment:
Q  134 tgtagccatgaaaagaaaaaaggattcaattgcccctgttagggctagaagaagatgcaataaaggaaaaggaaaaggaaaagttgatgaggcagacaat 233  Q
    ||||| ||||||||||||||| | |||||||||||||| ||||||| |   |||| |||||      |||  |||||| ||||||||||||||||| |      
T  8536761 tgtagtcatgaaaagaaaaaaaggttcaattgcccctgctagggctggccaaagacgcaat------aaatcaaaagggaaagttgatgaggcagaaagc 8536668  T
Q  234 catgatgaactttgcccttattttgataatctttcatctcac 275  Q
    |   || |||||||||||||||||||||||||| | ||||||    
T  8536667 c---atcaactttgcccttattttgataatcttccgtctcac 8536629  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 9004570 - 9004499
Alignment:
Q  201 aaaggaaaaggaaaagttgatgaggcagacaatcatgatgaactttgcccttattttgataatctttcatctcac 275  Q
    |||| |||||| ||||||||||||||||| | ||||||   |||||||||||| |||| ||||||| ||||||||    
T  9004570 aaagcaaaagggaaagttgatgaggcagaaagtcatga---actttgcccttactttgctaatcttccatctcac 9004499  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 9073655 - 9073710
Alignment:
Q  220 atgaggcagacaatcatgatgaactttgcccttattttgataatctttcatctcac 275  Q
    |||||||||| | |||||||||||||| ||||| |||||| |||||| ||||||||    
T  9073655 atgaggcagagagtcatgatgaacttttccctttttttgacaatcttccatctcac 9073710  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 1599238 - 1599278
Alignment:
Q  235 atgatgaactttgcccttattttgataatctttcatctcac 275  Q
    |||||||| ||| ||||| ||||||||||||||||||||||    
T  1599238 atgatgaagttttccctttttttgataatctttcatctcac 1599278  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 2844031 - 2844067
Alignment:
Q  238 atgaactttgcccttattttgataatctttcatctca 274  Q
    |||||||||||||||| |||||||||||| |||||||    
T  2844031 atgaactttgcccttactttgataatcttccatctca 2844067  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 48360768 - 48360831
Alignment:
Q  212 aaaagttgatgaggcagacaatcatgatgaactttgcccttattttgataatctttcatctcac 275  Q
    |||||||||||||| ||| | |||||||||||||||||||||||||||||||||| ||| ||||    
T  48360768 aaaagttgatgaggtagagagtcatgatgaactttgcccttattttgataatcttccatatcac 48360831  T

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Target: scaffold0627 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 5869 - 5796
Alignment:
Q  137 agccatgaaaagaaaaaaggattcaattgcccctgttagggctagaagaagatgcaataaaggaaaaggaaaag 210  Q
    |||||||||||||||| ||| ||||||| ||||| ||||||||||  ||||||||||||||| |||||| ||||    
T  5869 agccatgaaaagaaaagagggttcaattacccctattagggctagccgaagatgcaataaagcaaaagggaaag 5796  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 16717586 - 16717519
Alignment:
Q  136 tagccatgaaaagaaaaaaggattcaattgcccctgttagggctagaagaagatgcaataaaggaaaa 203  Q
    ||||||||||||||||||||| ||||||  |||| || ||||||||   ||||||||||||| |||||    
T  16717586 tagccatgaaaagaaaaaagggttcaatcacccccgtaagggctagccaaagatgcaataaaagaaaa 16717519  T

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