View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9747_low_9 (Length: 243)
Name: NF9747_low_9
Description: NF9747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9747_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 6116144 - 6116270
Alignment:
| Q |
19 |
aggtcagtgtagataaactctcgcagccgccattgggtcgtctctctcaactaataatcaacaaatgcccaaagttgactgacttgcctacttttccaaa |
118 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6116144 |
aggtcagtgtagataaactctcgcacccgccattgggtcgtctctctcaactaataatcaacaaatgcccagagttgactgacttgcctacttttccaaa |
6116243 |
T |
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| Q |
119 |
tgttgaagaattgcagttgtgtgaatc |
145 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
6116244 |
tgttgaggaattgcagttgtgtgaatc |
6116270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 13752546 - 13752672
Alignment:
| Q |
19 |
aggtcagtgtagataaactctcgcagccgccattgggtcgtctctctcaactaataatcaacaaatgcccaaagttgactgacttgcctacttttccaaa |
118 |
Q |
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||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13752546 |
aggtcagtgtagatatactctcgcggccgccattgggtcctctctctcaactaataatcaacaaatgcccaaagttgactgacttgcctacttttccaaa |
13752645 |
T |
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| Q |
119 |
tgttgaagaattgcagttgtgtgaatc |
145 |
Q |
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| T |
13752646 |
tgttgaagaattgcagttgtgtgaatc |
13752672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 6123294 - 6123168
Alignment:
| Q |
19 |
aggtcagtgtagataaactctcgcagccgccattgggtcgtctctctcaactaataatcaacaaatgcccaaagttgactgacttgcctacttttccaaa |
118 |
Q |
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|||||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6123294 |
aggtcagtgtagataaacactcgcagcggccattcgtccgtctctctcaactaataatcaacaaatgcccaaagttgactgacttgcctacttttccaaa |
6123195 |
T |
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| Q |
119 |
tgttgaagaattgcagttgtgtgaatc |
145 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
6123194 |
tgttgaggaattgcagttgtgtgaatc |
6123168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 13753143 - 13753229
Alignment:
| Q |
144 |
tcgtatgcgtttctactgctctcatattttcaaggattgtattgtttatgttgtgttgctttctttatgaatttaactgttgtttct |
230 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13753143 |
tcgtatgcgtttctactgctctcctattttcaaggattgtattgtttatgttgtgttgctttctttatgaatttaactgttgtttct |
13753229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 6117359 - 6117412
Alignment:
| Q |
148 |
atgcgtttctactgctctcatattttcaaggattgtattgtttatgttgtgttg |
201 |
Q |
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||||||||||| |||||||||||||||| ||||||| | ||||||||||||||| |
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| T |
6117359 |
atgcgtttctattgctctcatattttcagggattgtgtagtttatgttgtgttg |
6117412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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