View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9748_low_2 (Length: 321)
Name: NF9748_low_2
Description: NF9748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9748_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 36943252 - 36943557
Alignment:
| Q |
1 |
tgtgcaggtgagatcgatagatgagatacacaatatttttgaaattaaggatacgatacggcctaaatccgttaataaattattgaaaagaaagaggcgt |
100 |
Q |
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| T |
36943252 |
tgtgcgggtgggatcgatagatcaaatacacaatatttttgaaattaaggatacaatacagcctaaacccgttaataaattattgaaaagaaagaggcat |
36943351 |
T |
|
| Q |
101 |
tgataattcttcatcgttatataattacaacaatcataatttcataaatacattttaaatcattataggatatcaacaaaatcatcattg-aaaaaactc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36943352 |
tgataattcttcatcgttatataattacaacaatcataatgtcat-aatacattttaaatcattataggatatcaacaaaatcatcattgaaaaaaactc |
36943450 |
T |
|
| Q |
200 |
aaaacaagcatttgtctctatgcaatagccaacaattcacaagtgtcgctaataaattattgtctaatgttaactgattaaatcttttctccctcattag |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36943451 |
aaaacaagcatttgtctctatgcaatagccaacaattcagaagtatcgctaataaattattgtctaatgttaactaattaaatcttttctccctcattag |
36943550 |
T |
|
| Q |
300 |
catcatt |
306 |
Q |
| |
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||||||| |
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| T |
36943551 |
catcatt |
36943557 |
T |
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