View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9749_high_14 (Length: 256)
Name: NF9749_high_14
Description: NF9749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9749_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 5011085 - 5010855
Alignment:
| Q |
19 |
ttacatactccaaagagagacaatgaaccattgctgcagtgtacccatcatatgtgccccattagggtacactggcatgtgaagactaactataaggact |
118 |
Q |
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| T |
5011085 |
ttacatactccaaagagagacaatgaaccattgctgcagtgtacccatcatatgtgccccattagggtacactggcatgtgaagactaactataaggact |
5010986 |
T |
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| Q |
119 |
attggagagtcaagattgctgttacaaatttcaattatagattgaattattctctttggactcttgctgtacaacatccaaatcttaacaatgtcactca |
218 |
Q |
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| T |
5010985 |
attggagagtcaagattgctgttacaaatttcaattatagattgaattattctctttggactcttgctgtacaacatccaaatcttaacaatgtcactca |
5010886 |
T |
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| Q |
219 |
agttttcagctttgattacaagcctttgctt |
249 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5010885 |
agttttcagctttgattacaagcctttgctt |
5010855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 5553657 - 5553449
Alignment:
| Q |
22 |
catactccaaagagagacaatgaaccattgctgcagtgtacccatcatatgtgccccattagggtacactggcatgtgaagactaactataaggactatt |
121 |
Q |
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||||||||||||| |||||||||||||||| |||| || || ||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
5553657 |
catactccaaagaaagacaatgaaccattgatgcaatgcactcatcacatgtgcccaattagggttcactggcatgtgaagacaaactataaggactatt |
5553558 |
T |
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| Q |
122 |
ggagagtcaagattgctgttacaaatttcaattatagattgaattattctctttggactcttgctgtacaacatccaaatcttaacaatgtcactcaagt |
221 |
Q |
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| T |
5553557 |
ggcgagtcaaaatcgcagtaacaaatttcaattacaggatgaattactctctctggagtcttgcaattcaacatccaaatcttaacaatgtcacacaagt |
5553458 |
T |
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| Q |
222 |
tttcagctt |
230 |
Q |
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| T |
5553457 |
tttcagctt |
5553449 |
T |
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