View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9749_high_3 (Length: 558)

Name: NF9749_high_3
Description: NF9749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9749_high_3
NF9749_high_3
[»] chr5 (3 HSPs)
chr5 (80-400)||(34508986-34509309)
chr5 (485-539)||(34509318-34509372)
chr5 (489-534)||(19085362-19085407)
[»] chr1 (5 HSPs)
chr1 (141-400)||(44619605-44619867)
chr1 (407-539)||(44621257-44621392)
chr1 (80-159)||(44784938-44785017)
chr1 (489-534)||(50990998-50991043)
chr1 (360-509)||(44785081-44785232)
[»] chr7 (1 HSPs)
chr7 (467-539)||(26000104-26000176)
[»] chr6 (1 HSPs)
chr6 (489-534)||(30908354-30908399)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 6e-97; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 80 - 400
Target Start/End: Original strand, 34508986 - 34509309
Alignment:
Q  80 ggtgcatagaatgggttacctggagagaaaaatccaacgtgtttccatggattgaaacaggcatattgagatggggatgatttcgagcggcagatttgaa 179  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||| |||||||||||    
T  34508986 ggtgcatagaatggattacctggagagaaaaatccaacgtgtttccacggattgaaacaggcatatggagatggggatgattttgagcagcagatttgaa 34509085  T
Q  180 ttggaattttcttctcgctctcaatctcatcattctcggagtggttttaggtgaggttgccggaagtggaggcgatgagggt---nnnnnnnnnnnnnnn 276  Q
    |||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||                      
T  34509086 ttggaattttcttctcgctctcaatctcatcattcttgaagtggtttcaggtgaggttgccggaagtggaggcgatgagggtgaagaagaagaagaagaa 34509185  T
Q  277 nnnattaaatttgtttggagagaaggtggaattttttgtgaaccaatgaatgttaccaaagagaaatgcagagccattattcccatattttttgtcttga 376  Q
       || |||||||| |||||||||||||||||||| |||||||| ||||||||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  34509186 aaaatgaaatttgtgtggagagaaggtggaattttatgtgaaccgatgaatgttgccaaagagaaatagagagccattattcccatattttttgtcttga 34509285  T
Q  377 tcaacagcatcacttggttttggg 400  Q
    ||||| ||||| | || |||||||    
T  34509286 tcaaccgcatcgcctgattttggg 34509309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 485 - 539
Target Start/End: Original strand, 34509318 - 34509372
Alignment:
Q  485 tagttaaagggtttgttatttacaatgcaaaccatcataaagatttgatccatgg 539  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  34509318 tagttaaagggtttgttatttacaatgcaaaccatcagaaagatttgatcaatgg 34509372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 489 - 534
Target Start/End: Original strand, 19085362 - 19085407
Alignment:
Q  489 taaagggtttgttatttacaatgcaaaccatcataaagatttgatc 534  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||    
T  19085362 taaagggtttgttatctacaatgcaaaccatcagaaagatttgatc 19085407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 6e-63; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 141 - 400
Target Start/End: Original strand, 44619605 - 44619867
Alignment:
Q  141 catattgagatggggatgatttcgagcggcagatttgaattggaattttcttctcgctctcaatctcatcattctcggagtggttttaggtgaggttgcc 240  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||    
T  44619605 catatggagatggggatgattttgagtggcagatttgaattggaattttcttatcgctctcaatctcatcattctcgaagtagtttcaggtgaggttgcc 44619704  T
Q  241 ggaagtggaggcgatgagggt---nnnnnnnnnnnnnnnnnnattaaatttgtttggagagaaggtggaattttttgtgaaccaatgaatgttaccaaag 337  Q
    |||||||||| ||||||||||                     || |||||||| ||||||||||||||||||||  |||||||  |||||||||||||||    
T  44619705 ggaagtggagacgatgagggtgaagaagaagaagaagaaaaaatgaaatttgtgtggagagaaggtggaattttacgtgaaccgttgaatgttaccaaag 44619804  T
Q  338 agaaatgcagagccattattcccatattttttgtcttgatcaacagcatcacttggttttggg 400  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||||| ||||||||||    
T  44619805 agaaatgcagagccattatttccgtattttttgtcttgatcaaccgcatcacctggttttggg 44619867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 407 - 539
Target Start/End: Original strand, 44621257 - 44621392
Alignment:
Q  407 ttagtgtaaatgcacttaatttcccataaaacactcatattccataccttgactgagcccattcttaggaaact---gatgtagttaaagggtttgttat 503  Q
    |||| ||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   || ||||||||||||||||||||    
T  44621257 ttagagtagatgcacataatttcccataaaacactcatattccataccctgactgagcccattcttaggaaactgaagaagtagttaaagggtttgttat 44621356  T
Q  504 ttacaatgcaaaccatcataaagatttgatccatgg 539  Q
    |||||||||||||||||| |||||||||||| ||||    
T  44621357 ttacaatgcaaaccatcagaaagatttgatcaatgg 44621392  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 44784938 - 44785017
Alignment:
Q  80 ggtgcatagaatgggttacctggagagaaaaatccaacgtgtttccatggattgaaacaggcatattgagatggggatga 159  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||    
T  44784938 ggtgaatagaatggattacctggagagaaaaatccaacgtgtttccatggattgaaacaggcatgtggagatgcggatga 44785017  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 489 - 534
Target Start/End: Complemental strand, 50991043 - 50990998
Alignment:
Q  489 taaagggtttgttatttacaatgcaaaccatcataaagatttgatc 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  50991043 taaagggtttgttatttacaatgcaaaccatcataaagatttgatc 50990998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 509
Target Start/End: Original strand, 44785081 - 44785232
Alignment:
Q  360 catattttttgtctt-gatcaacagcatcacttggttttgggaagt-gattagtgtaaatgcacttaatttcccataaaacactcatattccatac-ctt 456  Q
    |||||| |||||||| |||| || ||||||| |||||||||||| | ||| || |||||||||  |||||||||||||||||||| |||| ||||| |||    
T  44785081 catattctttgtctttgatctaccgcatcacctggttttgggaaatagatgagagtaaatgcatgtaatttcccataaaacactcctatt-catactctt 44785179  T
Q  457 gactgagcccattcttaggaaactgatgtagttaaagggtttgttatttacaa 509  Q
    ||| | ||||||| || | ||||| ||| |  |||||||||||||||||||||    
T  44785180 gaccgggcccattattggaaaacttatggaaataaagggtttgttatttacaa 44785232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 467 - 539
Target Start/End: Complemental strand, 26000176 - 26000104
Alignment:
Q  467 attcttaggaaactgatgtagttaaagggtttgttatttacaatgcaaaccatcataaagatttgatccatgg 539  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  26000176 attcttaggaaactaaagtagttaaagggtttgttatttacaatgcaaaccatcagaaagatttgatcaatgg 26000104  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 489 - 534
Target Start/End: Original strand, 30908354 - 30908399
Alignment:
Q  489 taaagggtttgttatttacaatgcaaaccatcataaagatttgatc 534  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  30908354 taaagggtttgttatttacaatgcaaaccatcagaaagatttgatc 30908399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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