View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9749_high_4 (Length: 501)

Name: NF9749_high_4
Description: NF9749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9749_high_4
NF9749_high_4
[»] chr7 (11 HSPs)
chr7 (1-221)||(24854554-24854775)
chr7 (2-221)||(24537613-24537833)
chr7 (380-480)||(24846939-24847039)
chr7 (109-221)||(24726773-24726885)
chr7 (109-221)||(24826633-24826745)
chr7 (219-268)||(24846818-24846867)
chr7 (312-425)||(24837698-24837816)
chr7 (297-352)||(24846875-24846930)
chr7 (2-88)||(24797430-24797516)
chr7 (219-268)||(24837627-24837676)
chr7 (128-200)||(24696968-24697040)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24854554 - 24854775
Alignment:
Q  1 ggcaacaaagttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagattctttgaatgata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24854554 ggcaacaaagttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagattctttgaatgaaa 24854653  T
Q  101 a-tgcctcggagtatttgttcatgtcgtgaaccatttgaatataactattggaatcaactactttatggtcaactccaaatgctattgtgcggaaaaact 199  Q
    | ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24854654 aatgcctcggactaattgttcatgtcgtgaaccatttgaatataactattggaatcaactactttatggtcaaccccaaatgctattgtgcggaaaaact 24854753  T
Q  200 ctatcacctcttagttgctcat 221  Q
    | |||||||||| |||||||||    
T  24854754 ccatcacctcttggttgctcat 24854775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 24537833 - 24537613
Alignment:
Q  2 gcaacaaagttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagattctttgaatgataa 101  Q
    ||||| ||||||||||| |||||||||||||| || |||||   |||| || |||||||||||||| || |||||||||||||||||| || || || ||    
T  24537833 gcaacgaagttgtaattgcggttcataaatctaaacagccacccatgatgacggtatgtgaatgaactcgacactattttccagattcgtttaaggaaaa 24537734  T
Q  102 -tgcctcggagtatttgttcatgtcgtgaaccatttgaatataactattggaatcaactactttatggtcaactccaaatgctattgtgcggaaaaactc 200  Q
     ||  ||  |||| ||||| ||||| | ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  24537733 atgtgtcaaagtaattgttgatgtcatcaaccatttgaatataaccactggaatcaactacttcatggtcaactccaaatgctattgcgcggaaaaactc 24537634  T
Q  201 tatcacctcttagttgctcat 221  Q
     |||| ||||| |||||||||    
T  24537633 catcagctcttggttgctcat 24537613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 380 - 480
Target Start/End: Original strand, 24846939 - 24847039
Alignment:
Q  380 tccttcttttcttagttacaatatagaggtttgatatttgtaccatgtgaatgactcacaagaaagaagtttaaactaaaccattaaattaattacctaa 479  Q
    ||||||||||||| ||||||| || ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24846939 tccttcttttcttggttacaacatggaggtttgacatttataccatgtgaatgactcacaagaaagaagtttaaactaaaccattaaattaattacctaa 24847038  T
Q  480 a 480  Q
    |    
T  24847039 a 24847039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 24726773 - 24726885
Alignment:
Q  109 gagtatttgttcatgtcgtgaaccatttgaatataactattggaatcaactactttatggtcaactccaaatgctattgtgcggaaaaactctatcacct 208  Q
    ||||| ||||| ||||| | ||||||||||||||||||| | ||||||||||| ||||||||| |||||| ||||||| ||||||||||||| |||||||    
T  24726773 gagtaattgtttatgtcatcaaccatttgaatataactactagaatcaactaccttatggtcagctccaagtgctattttgcggaaaaactccatcacct 24726872  T
Q  209 cttagttgctcat 221  Q
    ||| |||||||||    
T  24726873 cttggttgctcat 24726885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 24826633 - 24826745
Alignment:
Q  109 gagtatttgttcatgtcgtgaaccatttgaatataactattggaatcaactactttatggtcaactccaaatgctattgtgcggaaaaactctatcacct 208  Q
    ||||| ||||| ||||| | |||||||||||||||| || ||||||||||||| |||||||||| ||||| ||||||| ||||||||||||| |||| ||    
T  24826633 gagtaattgttgatgtcatcaaccatttgaatataagtactggaatcaactaccttatggtcaattccaagtgctattttgcggaaaaactccatcagct 24826732  T
Q  209 cttagttgctcat 221  Q
    ||| |||||||||    
T  24826733 cttggttgctcat 24826745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 24846818 - 24846867
Alignment:
Q  219 cattaatgtttataaaattcaaaatgtgaactggttgtaagatatttata 268  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24846818 cattattgtttataaaattcaaaatgtgaactggttgtaagatatttata 24846867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 425
Target Start/End: Original strand, 24837698 - 24837816
Alignment:
Q  312 tagaaattgaata--catgtcacacatgtattaatttgttgtata--catgtgaaccggtggt-atgaagttctccttcttttcttagttacaatataga 406  Q
    |||||||||||||  ||||| | |||||||||||||| |||||||  ||||| ||| |||||| | || |||||||||||||||||  |||||| || ||    
T  24837698 tagaaattgaatatacatgttagacatgtattaatttattgtatatacatgtaaactggtggttaagatgttctccttcttttcttgcttacaacatgga 24837797  T
Q  407 ggtttgatatttgtaccat 425  Q
    ||||||| |||| ||||||    
T  24837798 ggtttgacatttataccat 24837816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 24846875 - 24846930
Alignment:
Q  297 ttgacatgcaagaaatagaaattgaatacatgtcacacatgtattaatttgttgta 352  Q
    ||||| |||||||| |||||||||||||||||| | |||||||||||||| |||||    
T  24846875 ttgacgtgcaagaagtagaaattgaatacatgttagacatgtattaatttattgta 24846930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 24797430 - 24797516
Alignment:
Q  2 gcaacaaagttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagatt 88  Q
    ||||| |||||||||||  |||||| ||||||||| |||||   |||| |  |||||||||||||| || |||||||||||||||||    
T  24797430 gcaacgaagttgtaattggggttcaaaaatcttaacagccaccaatgatgccggtatgtgaatgaactcgacactattttccagatt 24797516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 24837627 - 24837676
Alignment:
Q  219 cattaatgtttataaaattcaaaatgtgaactggttgtaagatatttata 268  Q
    ||||| |||| |||||| |||||||||||||||||| |||||||||||||    
T  24837627 cattattgttgataaaactcaaaatgtgaactggttttaagatatttata 24837676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 24696968 - 24697040
Alignment:
Q  128 gaaccatttgaatataactattggaatcaactactttatggtcaactccaaatgctattgtgcggaaaaactc 200  Q
    ||||||||| | ||||| || || || |||||||||||||||||||||| ||||||| | |||||||| ||||    
T  24696968 gaaccatttcagtataaatactgtaagcaactactttatggtcaactcccaatgctactttgcggaaatactc 24697040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University