View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9749_high_8 (Length: 335)
Name: NF9749_high_8
Description: NF9749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9749_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 22 - 318
Target Start/End: Original strand, 6623049 - 6623345
Alignment:
| Q |
22 |
cagggaaatgcttcaagagtagaacgagtgggacatcgcaatgccactgtaatgtagaagttactatgttacatacttcaagaaaaggataatggattgt |
121 |
Q |
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| T |
6623049 |
cagggaaatgcttcaagagtagagcgagtgggacatcccaatgccactgtaatgtagaagttactatgttacatacttcaagaaaaggataatggattgt |
6623148 |
T |
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| Q |
122 |
aaagtagaagttactttctcatatacttaaagataaggataatgcataaaaattatgcagaacataatggtcaagttgtacgcaggatgggtcatggatt |
221 |
Q |
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| T |
6623149 |
aaagtagaagttactttctcatatacttaaagataaggataatgcataaaaattatgcagaacataatggtcaagttgtacgcaggatgggtcatggatt |
6623248 |
T |
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| Q |
222 |
cagaggttcaaaaatgtaggaagataatcaagatatccaaataactaatgaagaatcctcacctctcggtggcagatttcccttttccaatctgtgc |
318 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6623249 |
cagaggttaaaaaatgtaggaagataatcaagatatccaagtaactaatgaagaatcctcacctctcggtggcagatttcccttttccaatctgtgc |
6623345 |
T |
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