View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9749_low_11 (Length: 414)
Name: NF9749_low_11
Description: NF9749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9749_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 29286650 - 29287051
Alignment:
| Q |
1 |
gaaatatttggaggagtccggcaccatcaaaggtggtgacc----------agcttcttttagaccaaattcctatgagattgaaccttgcaagacgtaa |
90 |
Q |
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| T |
29286650 |
gaaatatttggaggagtccggcaccatcaaaggtggtgaccttttcgtggaagcttcttttagaccaaattcctacgagattgaaccttgcaagacgtaa |
29286749 |
T |
|
| Q |
91 |
catcttaccaacagaggcatcgagtttgtgtgtgttgtgcaataggtgtgaggaatctaccaaccannnnnnnnacacattgagatgtcaatggcaatct |
190 |
Q |
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| T |
29286750 |
catcataccaaaagaggcatcgagtttgtgtgtgttgtgcaataggtttgaggaatctaccaaccattttttttacacattgagatgtcaatggcaatct |
29286849 |
T |
|
| Q |
191 |
ggagtaaggtgatggattggatgggaatctcttttatctcttttgttcatttcgagtgctggaattttgaaagtaacaacaagcgaatttgaaaggggtt |
290 |
Q |
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| T |
29286850 |
ggagtaaggtgatggattggatgggaatctcttttatctcttttgttcatttcgagtgctagaattttgaaagtaacaacaagcgaatttgaaagggg-- |
29286947 |
T |
|
| Q |
291 |
aattaaggcttatttggtacgcaaccatgtgggctatttggcaagcaagaaatcgaattatttttaagaacgacacgagggtggatgaggagatcgtgga |
390 |
Q |
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| T |
29286948 |
--ttaaggcttatttggtacgcaaccatgtgggctatttggcaagcaagaaatcgaattatttttaagaatgacacgagggtggatgaggagatcgtgga |
29287045 |
T |
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| Q |
391 |
ggaggt |
396 |
Q |
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| T |
29287046 |
ggaggt |
29287051 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 3960922 - 3960858
Alignment:
| Q |
299 |
cttatttggtacgcaaccatgtgggctatttggcaagcaagaaatcgaattatttttaagaacga |
363 |
Q |
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| T |
3960922 |
cttatttggcatgcaatgatttgggccatttggcaagcgagaaatcaaatcatttttaagaacga |
3960858 |
T |
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