View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9749_low_12 (Length: 398)
Name: NF9749_low_12
Description: NF9749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9749_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 188 - 380
Target Start/End: Complemental strand, 48415604 - 48415405
Alignment:
| Q |
188 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatcatataaactcttctgagccacattatatgacatgtt-------ctgtacaatg |
280 |
Q |
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| T |
48415604 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatcatataaactcttctgagccacattatatgacatgttctgataactgtacaatg |
48415505 |
T |
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| Q |
281 |
agcccggaataaatgtacaaatctggttagctcgtggttacaagtctcttcgacaacgtnnnnnnntatctatcttgacattgtatatgaattaaatccg |
380 |
Q |
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| T |
48415504 |
agcccagaataaatgtacaaatctggttagctcgtggttacaagtctcttcgacaacgtaaaaaaatatctatcttgacattgtatatgaattaaatccg |
48415405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 48415784 - 48415684
Alignment:
| Q |
14 |
cagcataaatttcaaccatcacaacaacaacaaacacattctttgggtgacattattgtaaatcgttacatcgaatgcgaaggatccaatgccagagtat |
113 |
Q |
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| T |
48415784 |
cagcataaatttcaaccatcacaacaacaacaaacacattctttgggtgacattattgtaaatcgttacattgaatgcgaaggatccaatgccagagtat |
48415685 |
T |
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| Q |
114 |
c |
114 |
Q |
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| T |
48415684 |
c |
48415684 |
T |
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