View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9749_low_2 (Length: 638)
Name: NF9749_low_2
Description: NF9749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9749_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 87 - 379
Target Start/End: Original strand, 11226960 - 11227252
Alignment:
| Q |
87 |
tcaagtgatgagatgtattatgggaaattggttgacatcatagaacttgattactatggtaagctgagggttgtgcttttcaagtgtatttgggtagatg |
186 |
Q |
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| T |
11226960 |
tcaagtgatgagatgtattatgggaaattggttgacatcatagaacttgattactatggtaagctgagggttgtgcttttcaagtgtgtttgggtagata |
11227059 |
T |
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| Q |
187 |
ctagacctaacaagggaattaagattgatcaatttggaataccaagtgtgaatttctctcgcttgatacacactggtgtgaatgaagtagatgaatcatt |
286 |
Q |
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| T |
11227060 |
ctagacctaacaagggaattaagattgatcaatttggaataccaagtgtgaatttctctagcttgatacacactggtgtgaatgaagtagatgaaccatt |
11227159 |
T |
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| Q |
287 |
catccttgcaactgatgctagaatggtatattatgttgatgatccatttgaagaaggttggtcttgtgtaagtcatatgaagcctagagacat |
379 |
Q |
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| T |
11227160 |
catccttgcaactgatgctagaatggtatattatgttgatgatccatttgaagaaggttggtcttgtgtaagtcatatgaagcctagagacat |
11227252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 440 - 638
Target Start/End: Original strand, 11227252 - 11227450
Alignment:
| Q |
440 |
tttttgtgagcaaactgtggagaacatagaagacttgcaattactgcaagaagatgacaatgaacaagagccaaatgtcaatgaagaagaacaagaacct |
539 |
Q |
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| T |
11227252 |
tttttgtgagcaaactgtggagaacatagaagacttgcaattactgcaagaagatgacaatgaacaagagccaaatatcaatgaagaagaacaagaacct |
11227351 |
T |
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| Q |
540 |
gatgagccagagccaaatcttgatgaatatcataataactgtagtgatgaagatgctaattttatgttagagtaatttaattatatgaacattttgtgc |
638 |
Q |
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| T |
11227352 |
gatgagccagagccaaatcttgatgaatatcataataactgtagtgatgaagatgctaatttcatgttagagtagtttaattatatgaacattttgtgc |
11227450 |
T |
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