View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9749_low_21 (Length: 255)
Name: NF9749_low_21
Description: NF9749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9749_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5447260 - 5447024
Alignment:
| Q |
1 |
caacattgacaagcaagaggtaattgtgtcgtatatctgtatctatctcacaattcccttgccctccattaccttgttaattttatttgtatatgatctt |
100 |
Q |
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| T |
5447260 |
caacattgacaagcaagaggtaattgtgtcgtatatctgtatctatctcacaattcccttgccctccattaccttgttaattttatttgtatatgatctt |
5447161 |
T |
|
| Q |
101 |
agaaaaatctaaattcaaatattactgcttcgaagacgtaattgtgtcgtatatgctgtgaacctttgttgttgtaaaatatagagaattatgaccacaa |
200 |
Q |
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||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5447160 |
agacacatctaaattcaaatattactgcttcgaagacgtaattgtgtcgtatatgctgtgaacctttgttgttgtaaaatatagagaattatgaccacaa |
5447061 |
T |
|
| Q |
201 |
ttgtgattatgatgttgcagtatatgcttcacttcttat |
239 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
5447060 |
ttgtgattatgatgttgcag--tatgcttcacttcttat |
5447024 |
T |
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