View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9749_low_23 (Length: 228)
Name: NF9749_low_23
Description: NF9749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9749_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 2927298 - 2927495
Alignment:
| Q |
20 |
aggttcacgaaatcacggtagcactgtgttttgttgaagctccaaagtgtatatattgccaaaatcacaatgagtaatgtgatttcaacaaactcgccac |
119 |
Q |
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| T |
2927298 |
aggttcacgaaatcacggtagcactgtgttttgttgaagctccaaagtgtatatattgccaaaatcacagtgagtaatgtgatttcaacaaactcgccac |
2927397 |
T |
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| Q |
120 |
caatctttccatttctccttgaatgaaaatcaaagaatctgaaatcttaagatgcaaccatgattcttcaaatgttaactagtaggcgcctatgcttc |
217 |
Q |
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| T |
2927398 |
caatctttccatttctccttgaatgaaaatcaaagaatctgaaatcttaagatgcaaccatgattcttcaaatgttaattagtaggcccctacgcttc |
2927495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 205
Target Start/End: Complemental strand, 2312036 - 2311904
Alignment:
| Q |
72 |
atattgccaaaatcacaatgagtaatgtgatttcaacaaactcgccaccaatctttccatttctccttgaatgaaaatcaaagaatctgaaatcttaaga |
171 |
Q |
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||||||||||||||||| |||||| |||||||||| |||| || ||| || ||||||||||||||||||||| |||||||||||||||| ||| || ||| |
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| T |
2312036 |
atattgccaaaatcacagtgagtagtgtgatttcatcaaattcaccatcagtctttccatttctccttgaataaaaatcaaagaatctg-aattttgaga |
2311938 |
T |
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| Q |
172 |
tgcaaccatgattcttcaaatgttaactagtagg |
205 |
Q |
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| T |
2311937 |
tgcaaccttgattcttcaaatgttaattagtagg |
2311904 |
T |
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