View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9749_low_24 (Length: 222)
Name: NF9749_low_24
Description: NF9749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9749_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 15610912 - 15611117
Alignment:
| Q |
1 |
tataaataacaacttaaaaaagaacaattgaagggtnnnnnnnttgtttaccgtcaactttggctggaactacaaatagtaaaataaatagaaacattgt |
100 |
Q |
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| T |
15610912 |
tataaataacaacttaaaaaagaacaattgaagggtaagaaaattgtttaccgtcaactttggttggaactacaaatagtaaaataaatagaaacattgt |
15611011 |
T |
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| Q |
101 |
ataaagaaacttaatgatagccatatatatcccctctttttatgtaacacacaggacaagttatttttcttgcgttacataatagaacaagatttagtca |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15611012 |
ataaataaacttaatgatagccatatatatcccctctttttatgtaacacacaggacaagttatttttcttgcgttacataatagaacaagatttggtca |
15611111 |
T |
|
| Q |
201 |
ttttat |
206 |
Q |
| |
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|||||| |
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| T |
15611112 |
ttttat |
15611117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 15601327 - 15601530
Alignment:
| Q |
1 |
tataaataacaacttaaaaaagaacaattgaagggtnnnnnnnttgtttaccgtcaactttggctggaactacaaatagtaaaataaatagaaacattgt |
100 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |
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| T |
15601327 |
tataaacaacaacttaaaaaagaacaattgaagggtaaaaaaattgtttaccgtcaactttggttggaattacaaataggaaaataaatagaaacattgt |
15601426 |
T |
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| Q |
101 |
ataaagaaacttaatgatagccatatatatcccctctttttatgtaacacacaggacaagttatttttcttgcgttacataatagaacaagatttagtca |
200 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||| |||| |
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| T |
15601427 |
ataaatgaacttaatgatagccatatatttcccctctttttatgtaacacacaggacaggttatttttctt--gttgcataatagaacaagatttggtca |
15601524 |
T |
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| Q |
201 |
ttttat |
206 |
Q |
| |
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|||||| |
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| T |
15601525 |
ttttat |
15601530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 15597442 - 15597602
Alignment:
| Q |
44 |
ttgtttaccgtcaactttggctggaactacaaatagtaaaataaatagaaacattgtataaagaaacttaatgatagccatatatatcccctctttttat |
143 |
Q |
| |
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|||||||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
15597442 |
ttgtttaccgtcaactttggttgtaactgcaaataggaaaataaatagaaacattgtataaataaacttaatgatagccatatatatcccctcttttcat |
15597541 |
T |
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| Q |
144 |
gtaacacacaggacaagttatttttcttgcgttacataatagaacaagatttagtcattttat |
206 |
Q |
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||||||||||||| | |||||||||||| ||| |||||||||||||||||| |||||||||| |
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| T |
15597542 |
gtaacacacaggataggttatttttctt--gttgcataatagaacaagatttggtcattttat |
15597602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 47 - 195
Target Start/End: Original strand, 15589192 - 15589341
Alignment:
| Q |
47 |
tttaccgtcaactttggctggaactacaaatagtaaaataaatagaaacattgtataaagaaacttaatgat---agccatatatatcccctctttttat |
143 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| ||| |||||||| |||||||||| |||||||||||||| |
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| T |
15589192 |
tttaccgtcaactttggttggaactacaaataggaaaataaatagaaacattgtgtaaataaatttaatgattgcagccatatatttcccctctttttat |
15589291 |
T |
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| Q |
144 |
gtaacacacaggacaagttatttttcttgcgttacataatagaacaagattt |
195 |
Q |
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|||||| | || ||| |||||||||||| |||||||||||||||||||||| |
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| T |
15589292 |
gtaacagatagaacaggttatttttctt--gttacataatagaacaagattt |
15589341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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