View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9749_low_25 (Length: 218)
Name: NF9749_low_25
Description: NF9749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9749_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 30287057 - 30287221
Alignment:
| Q |
17 |
acatcaaaattcaaacacagggaccatagattagaaacttccatttcagcactatattgatgcatatgaaatgagcaaattaagcaaaaagttaataaaa |
116 |
Q |
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| T |
30287057 |
acatcaaaattcaaacacaggcaccatagattagaaacttccatttcagcactatattgatgcatatgacatgagcaaattaagcaaaaagttaataaaa |
30287156 |
T |
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| Q |
117 |
caaatacacaaataaaacaaccgagagcagaaaattgagatgcataaaataaaacagcaacaagt |
181 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
30287157 |
caaatacacaaataaaacaaccgacagcagaaaattgagatgtataaaataaaacagcaacaagt |
30287221 |
T |
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